PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0101s0023.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 367aa    MW: 40729.1 Da    PI: 7.0233
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0101s0023.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.81.1e-14158209155
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +r++h ++Er+RR+++ + ++ Lr+llP+a   ++++ + a+i+  A++Y+k+L+
  Kalax.0101s0023.1.p 158 QRMTHIAIERNRRRQMSDYLSVLRSLLPPA---YAERGDQASIVGGAIDYVKNLE 209
                          79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.16E-11156213No hitNo description
SuperFamilySSF474599.42E-17157223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.713157208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-13158222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-11158209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-10163214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MEEGCCGGGE GGGPINLSAS FDGGVEPSAR SDFLTASLGL DDRMPFLRML HALDPSITRS  60
LLKKNPTETE TQILPVDCCI THDTPELHSP VMSEGKNPTQ VSPDGTLEER GELNSVSECR  120
QDSSSDRTHQ SQLSCGKMRK PRKHAKVVVE NKKDVEKQRM THIAIERNRR RQMSDYLSVL  180
RSLLPPAYAE RGDQASIVGG AIDYVKNLEQ LLQSLQAQKR QRKVDEKRNR CSNSMPLSPE  240
TSDGISTSSS TASLDEDCDM NSPLEKKADI NIRVVQTHVN LHIGCDDMKQ SELIKLLIAL  300
ERLRLKILHL NITSIHKSSF YSLSLNVEDE CKLRSTEEIS SSIEQLLNSI NIYNGRRSSV  360
TKKLNT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158169RMTHIAIERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.12e-49bHLH family protein