PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0102s0030.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C2H2

Protein Properties

Length: 484aa MW: 52912.4 Da PI: 8.6794

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0102s0030.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.4	2.5e-05	78	100	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Kalax.0102s0030.1.p 78 FVCEICHKGFQRDQNLQLHRRGH 100 89*******************88 PP
2	zf-C2H2	15.7	4.3e-05	154	176	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H++t+ Kalax.0102s0030.1.p 154 WKCDKCSKKYAVQSDWKAHQKTC 176 58*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	7.2E-5	77	100	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.82E-7	77	100	No hit	No description
SMART	SM00355	0.046	78	100	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.637	78	100	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	80	100	IPR007087	Zinc finger, C2H2
SMART	SM00355	100	119	149	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	5.5E-5	142	175	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.82E-7	149	175	No hit	No description
SMART	SM00355	94	154	174	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence Send to blast
MSNLTGDAVS VTSAADSGEE DDMHPQSQIK VVSAAASNSN GSLQLPPVKK KRNLPGTPDP 60 AAEVVALSPT TLMATNRFVC EICHKGFQRD QNLQLHRRGH NLPWKLRQRS SAEVKKRVYI 120 CPEPSCVHHN PARALGDLTG IKKHFSRKHG EKKWKCDKCS KKYAVQSDWK AHQKTCGTRE 180 YKCDCGTIFS RRDSFITHRA FCDALAEENS KVNQEQQEMG MAVNGSNPNL QTHVQELMSS 240 SVPDFGSFDQ KNPLKSIPQE LVPTPFRPTM NPNAGGFSAR PGTLFSSPPS SLQLGSNSST 300 RFNSYVQDTN HYGGSMPNAY TSATALLQKA AQMGATATIN SPMMQQSYKV SSMAGAYQVP 360 RQPQPDYVPM FENHQPRQQM LGGETNQQML EAAADESSTA MNEQMSMFSR VFMNGGDQGH 420 NISSLFKGLE QVDSMRGTSG ANKVQPGLSM TAFGSVGDLI PTVDFLGVGG SRPSDLHRQE 480 ERF*

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence Send to blast

MSNLTGDAVS VTSAADSGEE DDMHPQSQIK VVSAAASNSN GSLQLPPVKK KRNLPGTPDP  60
AAEVVALSPT TLMATNRFVC EICHKGFQRD QNLQLHRRGH NLPWKLRQRS SAEVKKRVYI  120
CPEPSCVHHN PARALGDLTG IKKHFSRKHG EKKWKCDKCS KKYAVQSDWK AHQKTCGTRE  180
YKCDCGTIFS RRDSFITHRA FCDALAEENS KVNQEQQEMG MAVNGSNPNL QTHVQELMSS  240
SVPDFGSFDQ KNPLKSIPQE LVPTPFRPTM NPNAGGFSAR PGTLFSSPPS SLQLGSNSST  300
RFNSYVQDTN HYGGSMPNAY TSATALLQKA AQMGATATIN SPMMQQSYKV SSMAGAYQVP  360
RQPQPDYVPM FENHQPRQQM LGGETNQQML EAAADESSTA MNEQMSMFSR VFMNGGDQGH  420
NISSLFKGLE QVDSMRGTSG ANKVQPGLSM TAFGSVGDLI PTVDFLGVGG SRPSDLHRQE  480
ERF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	7e-35	150	213	3	66	Zinc finger protein JACKDAW
5b3h_F	7e-35	150	213	3	66	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA sequence 5'-CTTTTGTCC-3' (PubMed:21265895, PubMed:25929516). Regulates photoperiodic flowering by modulating sugar transport and metabolism (PubMed:21265895, PubMed:25929516). Regulates SUS1 and SUS4 (PubMed:21265895). Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:25829440). {ECO:0000269\|PubMed:21265895, ECO:0000269\|PubMed:25829440, ECO:0000269\|PubMed:25929516}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by 'SHORT-ROOT' (SHR)(PubMed:16640459). Strongly down-regulated by sugar deprivation, but not regulated by day-length. {ECO:0000269\|PubMed:16640459}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028085273.1	1e-177	zinc finger protein GAI-ASSOCIATED FACTOR 1-like
Swissprot	Q9FFH3	1e-112	IDD8_ARATH; Zinc finger protein NUTCRACKER
TrEMBL	A0A1U8NUW4	1e-167	A0A1U8NUW4_GOSHI; protein indeterminate-domain 2-like
STRING	Gorai.004G088400.1	1e-162	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44160.1	1e-105	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Kalax.0102s0030.1.p

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Long Y, et al. In vivo FRET-FLIM reveals cell-type-specific protein interactions in Arabidopsis roots. Nature, 2017. 548(7665): p. 97-102 [PMID:28746306]