PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0102s0032.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NF-YB
Protein Properties Length: 173aa    MW: 19067.4 Da    PI: 5.1077
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0102s0032.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB1611.7e-5038133297
                NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 
                          +eqd++lPianv+r+mk++lP +akisk+aket+qecvsefisfvt++asdkc++ekrkt+ngdd++wal++lGf+dy++++k yl +yr
  Kalax.0102s0032.2.p  38 KEQDHLLPIANVGRMMKQILPPKAKISKEAKETMQECVSEFISFVTGDASDKCRKEKRKTLNGDDICWALGSLGFDDYAATMKRYLLRYR 127
                          79**************************************************************************************** PP

                NF-YB  92 elegek 97 
                          ele+e+
  Kalax.0102s0032.2.p 128 ELESER 133
                          ***987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.3E-4733144IPR009072Histone-fold
SuperFamilySSF471133.26E-3640145IPR009072Histone-fold
PfamPF008089.5E-2644107IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.8E-157189No hitNo description
PRINTSPR006152.8E-1590108No hitNo description
PRINTSPR006152.8E-15109127No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MRVRMVDNRG TDLSGRDLKL TCEGESSGAA ANQEGVLKEQ DHLLPIANVG RMMKQILPPK  60
AKISKEAKET MQECVSEFIS FVTGDASDKC RKEKRKTLNG DDICWALGSL GFDDYAATMK  120
RYLLRYRELE SERANQNRVG NNEQNDIEPP PADNPDAVSG SNIAATTINF NL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B2e-4037128192Transcription factor HapC (Eurofung)
4g92_B2e-4037128192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022770952.13e-67nuclear transcription factor Y subunit B-4-like
SwissprotO822485e-55NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A498K5M28e-64A0A498K5M2_MALDO; Uncharacterized protein
STRINGXP_008368975.11e-64(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.12e-57nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]