PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0102s0091.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

LBD

Protein Properties

Length: 218aa MW: 23995.6 Da PI: 6.663

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0102s0091.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	127.3	7.2e-40	7	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C aCk+lrrkC+k+Cv+apyf++eq +++fa++hk+FGasnv+kll++lp ++r++a+ ++ yeA+ar++dPvyG++++i++lqqq+ + Kalax.0102s0091.1.p 7 PCGACKFLRRKCVKGCVFAPYFCHEQgAAQFAAIHKVFGASNVSKLLAHLPVSDRSEAALTISYEAQARVHDPVYGCISHIFALQQQVVN 96 7***********************89********************************************************** PP DUF260 90 lkaelallkee 100 l+a+la+lk++ Kalax.0102s0091.1.p 97 LQAQLAYLKQQ 107 *****9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.385	6	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.2E-38	7	105	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MTGSSSPCGA CKFLRRKCVK GCVFAPYFCH EQGAAQFAAI HKVFGASNVS KLLAHLPVSD 60 RSEAALTISY EAQARVHDPV YGCISHIFAL QQQVVNLQAQ LAYLKQQGGQ GLFIGPNSPS 120 TNPNWGHQLP GNNPNLQHQN QQTQVFNQTH LTHLMNMASM ESSENSTSSG RNPAVDPYSC 180 SYDETNSQNL DEGDERKWDF EDADDLRSVA FRYMQHS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-35	3	101	7	104	LOB family transfactor Ramosa2.1
5ly0_B	3e-35	3	101	7	104	LOB family transfactor Ramosa2.1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19. {ECO:0000269\|PubMed:17259263}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. {ECO:0000269\|PubMed:15659631, ECO:0000269\|PubMed:17259263}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021658319.1	7e-79	LOB domain-containing protein 29-like
Swissprot	Q9M2J7	9e-67	LBD29_ARATH; LOB domain-containing protein 29
TrEMBL	A0A2C9UQF8	2e-76	A0A2C9UQF8_MANES; Uncharacterized protein
STRING	cassava4.1_026776m	4e-77	(Manihot esculenta)
STRING	Lus10033873	3e-77	(Linum usitatissimum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58190.1	5e-56	lateral organ boundaries-domain 29

Link Out ? help Back to Top
Phytozome	Kalax.0102s0091.1.p

Publications ? help Back to Top
Gupta A,Singh M,Laxmi A Interaction between glucose and brassinosteroid during the regulation of lateral root development in Arabidopsis. Plant Physiol., 2015. 168(1): p. 307-20 [PMID:25810094] Porco S, et al. Lateral root emergence in Arabidopsis is dependent on transcription factor LBD29 regulation of auxin influx carrier LAX3. Development, 2016. 143(18): p. 3340-9 [PMID:27578783] Lee K,Seo PJ High-temperature promotion of callus formation requires the BIN2-ARF-LBD axis in Arabidopsis. Planta, 2017. 246(4): p. 797-802 [PMID:28766014] Xu C,Cao H,Xu E,Zhang S,Hu Y Genome-Wide Identification of Arabidopsis LBD29 Target Genes Reveals the Molecular Events behind Auxin-Induced Cell Reprogramming during Callus Formation. Plant Cell Physiol., 2018. 59(4): p. 744-755 [PMID:29121271] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]