PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0103s0071.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

NAC

Protein Properties

Length: 216aa MW: 24431.6 Da PI: 6.7823

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0103s0071.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	83.2	5.3e-26	13	146	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyW 83 lppG+rF Pt+++l+ +yL+ k + ++ ++ ++i e+d++ ++P +L + + +++++wy +s+r ++++ +r +r t+ gyW Kalax.0103s0071.1.p 13 LPPGCRFFPTEQQLLRHYLRGKNSVSDdHSNVNMIGEFDVLGHDPFELVEigcfeyGIGGRRRHWYCYSPRVERKR--TRMRR-TRGGYW 99 79****************99777663344477**********7456776555557779999999988765..46666.789* PP NAM 84 katgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128 k +gk ++v+ ++g ++g ++ vf g a++g tdWv+ ey+l Kalax.0103s0071.1.p 100 KRKGKVRDVVGEGGVVTGKRTEYVFMLGefGAKSGLLTDWVVYEYAL 146 ************************65348999*********87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.07E-29	9	161	IPR003441	NAC domain
PROSITE profile	PS51005	33.82	13	161	IPR003441	NAC domain
Pfam	PF02365	2.1E-15	14	146	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MADPKNPAQR APLPPGCRFF PTEQQLLRHY LRGKNSVSDD HSNVNMIGEF DVLGHDPFEL 60 VEIGCFEYGI GGRRRHWYCY SPRVERKRTR MRRTRGGYWK RKGKVRDVVG EGGVVTGKRT 120 EYVFMLGEFG AKSGLLTDWV VYEYALIEED KDFVLCRAFE KSRQREDASH AANFGVSGDS 180 CLHDSSDLAS IMEQGDFIEL DDLLKPLPSM DNAGS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-18	6	161	10	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-18	6	161	10	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-18	6	161	10	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-18	6	161	10	165	NO APICAL MERISTEM PROTEIN
3swm_A	2e-18	6	161	13	168	NAC domain-containing protein 19
3swm_B	2e-18	6	161	13	168	NAC domain-containing protein 19
3swm_C	2e-18	6	161	13	168	NAC domain-containing protein 19
3swm_D	2e-18	6	161	13	168	NAC domain-containing protein 19
3swp_A	2e-18	6	161	13	168	NAC domain-containing protein 19
3swp_B	2e-18	6	161	13	168	NAC domain-containing protein 19
3swp_C	2e-18	6	161	13	168	NAC domain-containing protein 19
3swp_D	2e-18	6	161	13	168	NAC domain-containing protein 19
4dul_A	2e-18	6	161	10	165	NAC domain-containing protein 19
4dul_B	2e-18	6	161	10	165	NAC domain-containing protein 19
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	85	101	RKRTRMRRTRGGYWKRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002282899.1	2e-50	PREDICTED: NAC domain-containing protein 72 isoform X1
TrEMBL	F6H1B7	4e-49	F6H1B7_VITVI; Uncharacterized protein
STRING	VIT_18s0001g10250.t01	7e-50	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27410.2	9e-20	NAC family protein

Link Out ? help Back to Top
Phytozome	Kalax.0103s0071.1.p