PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0104s0016.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 233aa    MW: 25968.5 Da    PI: 8.8208
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0104s0016.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.8e-057395123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         y+C+ C + F++   L  H+++H
  Kalax.0104s0016.1.p 73 YTCSFCRREFKSAQALGGHMNVH 95
                         9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.51E-67099No hitNo description
PROSITE profilePS5015711.15773100IPR007087Zinc finger, C2H2
SMARTSM003550.00527395IPR015880Zinc finger, C2H2-like
PfamPF139121.7E-57396IPR007087Zinc finger, C2H2
PROSITE patternPS0002807595IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0048441Biological Processpetal development
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MIEQAESKHV MWMTRKQVLM PSQLFTSSMV RAGRAAAAVA STYDHQYESW EERAFAEDAA  60
RGLGGFIWPP RSYTCSFCRR EFKSAQALGG HMNVHRRDRA RLKQALSPRR SDTKADFSPQ  120
QQTTSIVTSS EESTKVAVGG GDLLNKQERP CVLKSSGQEK EYDVSTRLCM GLSLDEVAKC  180
KKLKSASFVW VEPCLAVVQS SPSNHHDARQ HGLIQSKMSL MEELDLELRL GV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-136895229superman protein
2l1o_A2e-136895229Transcriptional regulator SUPERMAN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.11e-28zinc-finger protein 10