PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0104s0065.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family Trihelix
Protein Properties Length: 283aa    MW: 31410.5 Da    PI: 10.5458
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0104s0065.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix56.38.1e-1831120186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                          +Wt++ +++Li+a   +  +l+rg+l++++W+ev++++     ++++ +r+ +qCk++++ l+k+yk +k +++  +s + s +p+f++l
  Kalax.0104s0065.1.p  31 CWTEEATRTLIDAWGTRYLDLNRGNLRQKHWQEVADAVnarhgAAKKTRRTDVQCKNRIDTLKKKYKIEKSRASAAASYA-SPWPFFHRL 119
                          8**************************************99999999***************************986555.59******9 PP

             trihelix  86 e 86 
                          +
  Kalax.0104s0065.1.p 120 D 120
                          8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.4E-2729122No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MDDPPPPPQQ HTLALVPHRA PHGPFPFRED CWTEEATRTL IDAWGTRYLD LNRGNLRQKH  60
WQEVADAVNA RHGAAKKTRR TDVQCKNRID TLKKKYKIEK SRASAAASYA SPWPFFHRLD  120
SLIGAIPSNK SSLSSLPAHR RSGFSAPVPV APRSASVKRP AFDDSSFRRN FFSTFAAAAA  180
AATAEDSDAT RKSRSSSAGR LGGAVGDTGG CKELAQAIAT FGEIYERVEG SKQRQVIELE  240
MKRMQFAKEL EIQRMEMLVD MQLQFEKSKR QKRQSNGAEA VV*
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00413DAPTransfer from AT3G58630Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010277022.15e-93PREDICTED: trihelix transcription factor ASIL2
SwissprotQ9LJG83e-33ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A1U8B7L01e-91A0A1U8B7L0_NELNU; trihelix transcription factor ASIL2
STRINGXP_010277022.12e-92(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.12e-44sequence-specific DNA binding transcription factors