PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0104s0078.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 345aa    MW: 39451.7 Da    PI: 8.4404
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0104s0078.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.75.6e-50171461128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                          + pGfrFhPtdeelv +yL++kve+k+l++ e ik++d+yk++PwdLp ++v ++++ewyfF+ r +ky+++ r+nr+t sg+Wkatg d
  Kalax.0104s0078.1.p  17 MLPGFRFHPTDEELVAFYLTRKVENKQLRI-ELIKQIDLYKYDPWDLPtTSVGTGDQEWYFFCLRGRKYRNSVRPNRVTGSGFWKATGID 105
                          579***************************.89***************7789999*********************************** PP

                  NAM  90 kevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          k+++s    +e +glkk+Lv+y+g+a kg+ktdW+mhe+rl
  Kalax.0104s0078.1.p 106 KPIYSFkqPHEFIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 146
                          ****96334455***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-5316184IPR003441NAC domain
PROSITE profilePS5100552.88717185IPR003441NAC domain
PfamPF023657.8E-2519146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MNMYDEKKQD HDKDEVMLPG FRFHPTDEEL VAFYLTRKVE NKQLRIELIK QIDLYKYDPW  60
DLPTTSVGTG DQEWYFFCLR GRKYRNSVRP NRVTGSGFWK ATGIDKPIYS FKQPHEFIGL  120
KKSLVYYRGS AGKGTKTDWM MHEFRLPPQR RNSAGQQPQQ HSSLAKSSNI ALEAEVWTLC  180
RIFKRVSCYK KYVPSHHQQQ SKRNIASSLT DSSSKTCSNE SDHNNSHYND NSSSEFYVNF  240
ADHSSYKSSS ISIARQQNHI TASTTAHHHQ QPLLTCSNAF DHHQQQRSSS DVQISNSSAG  300
FWNASGDVTF AGESGGDWDE LRPVVDPYAV NVALPAPQLD YDFK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-491919119171NO APICAL MERISTEM PROTEIN
1ut4_B8e-491919119171NO APICAL MERISTEM PROTEIN
1ut7_A8e-491919119171NO APICAL MERISTEM PROTEIN
1ut7_B8e-491919119171NO APICAL MERISTEM PROTEIN
4dul_A8e-491919119171NAC domain-containing protein 19
4dul_B8e-491919119171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023894516.11e-108transcription factor JUNGBRUNNEN 1 isoform X2
SwissprotQ9SK551e-87NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A3N7EHA81e-106A0A3N7EHA8_POPTR; Uncharacterized protein
STRINGVIT_12s0028g00860.t011e-106(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.17e-83NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]