PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0105s0017.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 204aa    MW: 23243.1 Da    PI: 9.2183
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0105s0017.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.91.1e-18350148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd +l++ ++ +G ++W++Ia+  g++R++k+c++rw +yl
  Kalax.0105s0017.1.p  3 KGAWTPEEDHILAETIAIHGAKRWRKIAAFAGLNRCGKSCRLRWMNYL 50
                         79********************************************97 PP
2Myb_DNA-binding49.69.3e-1656101148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg  +++E++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l
  Kalax.0105s0017.1.p  56 RGDISAQEEDLILRLHKLLGNR-WALIAGRLP-GRTDNEIKNYWNSHL 101
                          677799****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.524154IPR017930Myb domain
SuperFamilySSF466899.98E-30297IPR009057Homeodomain-like
SMARTSM007177.6E-14252IPR001005SANT/Myb domain
PfamPF002497.2E-18350IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-24457IPR009057Homeodomain-like
CDDcd001676.33E-11550No hitNo description
SMARTSM007172.8E-1555103IPR001005SANT/Myb domain
PROSITE profilePS5129419.5955105IPR017930Myb domain
PfamPF002492.1E-1456101IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-2458105IPR009057Homeodomain-like
CDDcd001678.61E-1160101No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MSKGAWTPEE DHILAETIAI HGAKRWRKIA AFAGLNRCGK SCRLRWMNYL RPNIKRGDIS  60
AQEEDLILRL HKLLGNRWAL IAGRLPGRTD NEIKNYWNSH LSKRMRDANG QDPERRSRST  120
NVKNYEDSQG PSSSIARSNV KVNHHTNPSI IAQEADQPHK KLIENNKNEM MANSFGASEF  180
EFLSEGFFEV DWISSFLEFD GCS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-2711055108B-MYB
1h8a_C5e-27110525128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007216465.24e-69transcription factor WER isoform X1
RefseqXP_020416417.11e-69transcription factor MYB114 isoform X2
RefseqXP_021800600.15e-69transcription factor WER-like
TrEMBLA0A314UT628e-69A0A314UT62_PRUYE; Transcription factor MYB114-like
STRINGEMJ176644e-69(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14750.18e-52myb domain protein 66