PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0106s0064.3.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NF-YB
Protein Properties Length: 132aa    MW: 14630.5 Da    PI: 6.7747
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0106s0064.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB179.53e-5627120194
                NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkky 90 
                          vreqdrflPian+srimkk+lPan+ki+kdaketvqecvsefisfvtseasdkc rekrkt+ngddllwa+atlGfedy++pl+vyl++y
  Kalax.0106s0064.3.p  27 VREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFVTSEASDKCLREKRKTVNGDDLLWAMATLGFEDYIDPLRVYLNRY 116
                          69**************************************************************************************** PP

                NF-YB  91 rele 94 
                          re++
  Kalax.0106s0064.3.p 117 REVH 120
                          **85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.105.2E-5123120IPR009072Histone-fold
SuperFamilySSF471136.99E-3830120IPR009072Histone-fold
PfamPF008081.0E-273397IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.6E-196179No hitNo description
PROSITE patternPS0068506480IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.6E-198098No hitNo description
PRINTSPR006151.6E-1999117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MAEAPASPGG GGSHDSGGDQ SPRSSNVREQ DRFLPIANIS RIMKKALPAN GKIAKDAKET  60
VQECVSEFIS FVTSEASDKC LREKRKTVNG DDLLWAMATL GFEDYIDPLR VYLNRYREVH  120
LTCHSQLFFF F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A5e-4628118393NF-YB
4awl_B5e-4628118494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A5e-4628118494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010920928.15e-76nuclear transcription factor Y subunit B isoform X2
RefseqXP_029120279.19e-76nuclear transcription factor Y subunit B-1 isoform X1
SwissprotQ8VYK42e-71NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLA0A251NV353e-75A0A251NV35_PRUPE; Uncharacterized protein
STRINGPGSC0003DMT4000043664e-75(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53340.11e-63nuclear factor Y, subunit B10
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]