PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0106s0067.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 595aa    MW: 66477.1 Da    PI: 6.3731
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0106s0067.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.2e-12424470455
                          HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                          +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  Kalax.0106s0067.1.p 424 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYITELQ 470
                          799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.8E-5051239IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474595.1E-18419483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.876420469IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.56E-14423474No hitNo description
PfamPF000103.9E-10424470IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.0E-18424483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-16426475IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MMKSEVRMGW SEEEKALIAS LLGSRAIDYL LTSLGSGDGG QLMALGSDEN LHSKLSDLVE  60
RPDSSDFSWN YAIFWQLSRS RNGDMVLVWG DGCCREPMDR EELRVGTSCG DRFEDESQQR  120
MRKRVIQNLH AVLGGFEEDD FVLHLDRVTD TEMFFLASMY FSFPLGEGGP GMCCKLGMHL  180
WLPDLPVSSR DYCVRSFLAK SAGFQTVVLV PTDMGVVELG SLRSIPESLA WVQSLRSLFS  240
MRSQARFNRP LNENILSGKL EHRDEAEGNT KIFGQDITLG RRSLFREKLT IRKNEDRPWT  300
ACTPPSIIQF PNIQNASAGW ARFCGNKQVN SPGVFTSSAN NNSHELVNGT REDFRFNSYQ  360
PQKEVQIDFS AAPRQPVVNQ PVSAESEHSD VETSCKEAGS SQAVDRRPKK RGRKPANGRE  420
EPLNHVEAER QRREKLNQRF YALRAVVPNI SKMDKASLLG DAITYITELQ AKLKDLESER  480
MKLGNASVTG NTLILESSSI TEVQNRVPNV DIESSQDEVV VKVTCPLEAH PANRIIQAFK  540
EAEMKVVDSK LAVADNTVCH TFVIKSNGRD WLTRERVSAA LARDSSKLEL SSLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-30418485269Transcription factor MYC2
5gnj_B3e-30418485269Transcription factor MYC2
5gnj_E3e-30418485269Transcription factor MYC2
5gnj_F3e-30418485269Transcription factor MYC2
5gnj_G3e-30418485269Transcription factor MYC2
5gnj_I3e-30418485269Transcription factor MYC2
5gnj_M3e-30418485269Transcription factor MYC2
5gnj_N3e-30418485269Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1405413RRPKKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028081876.10.0transcription factor bHLH13-like
SwissprotA0A3Q7ELQ20.0MTB1_SOLLC; Transcription factor MTB1
TrEMBLA0A167V6C10.0A0A167V6C1_CAMSI; MYC2 trancriptor
STRINGPOPTR_0014s09520.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.31e-172bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]