PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0107s0005.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HD-ZIP
Protein Properties Length: 733aa    MW: 81324 Da    PI: 7.0077
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0107s0005.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox68.21e-2179134156
                          TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          r+k +++t+eq++e+e+lF+++++p++++r++L+k+lgL+ rqVk+WFqNrR++ k
  Kalax.0107s0005.2.p  79 RKKYHRHTAEQIREMEALFKESPHPDEKQRQDLSKQLGLSSRQVKFWFQNRRTQIK 134
                          7999************************************************9877 PP
2START195.32.7e-612504742205
                          HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.. CS
                START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv........dsgealrasgvvdmvlallveellddkeqWdetla.. 77 
                          +a+ a +el ++a++++p+Wv+s+    e++n+d++++ f ++            +ea+r++++v+++l++l ++++d   +W+e ++  
  Kalax.0107s0005.2.p 250 IANHAVEELKQMATVGAPLWVQSVeagrEILNYDVYMKLFCKEMDtfsslrptEAIEASRDTRLVFADLPQLAQSFMDAD-KWKELFPtm 338
                          678899**********************************7755489*********************************.****99999 PP

                          ..EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEEC CS
                START  78 ..kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepks 158
                            ka+t++ i++g      ga+qlm+aelq+l+p+vp R+++f+R+++ql+a +w+ivdvSvd   ++  +s + ++ ++pSg++ie++s
  Kalax.0107s0005.2.p 339 isKATTIDIIRNGegpsrnGAVQLMFAELQMLTPMVPsREVYFIRSCKQLSASQWAIVDVSVDKYMDNA-ESLFKKCSKRPSGCIIEDTS 427
                          99******************************************************************9.8******************* PP

                          TCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
                START 159 nghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                          ngh+kv+wveh ++++  +h+++r +v+sg+a+ga++w+atlq qce
  Kalax.0107s0005.2.p 428 NGHCKVIWVEHLECQKIPVHNMYRTIVNSGQAFGASRWMATLQLQCE 474
                          **********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-2263130IPR009057Homeodomain-like
SuperFamilySSF466891.71E-2065137IPR009057Homeodomain-like
PROSITE profilePS5007118.10776136IPR001356Homeobox domain
SMARTSM003892.1E-1678140IPR001356Homeobox domain
PfamPF000464.7E-1979134IPR001356Homeobox domain
CDDcd000866.38E-1783134No hitNo description
PROSITE patternPS000270111134IPR017970Homeobox, conserved site
PROSITE profilePS5084837.664240478IPR002913START domain
SuperFamilySSF559612.61E-28242475No hitNo description
CDDcd088752.32E-100244474No hitNo description
SMARTSM002343.2E-55249475IPR002913START domain
PfamPF018521.1E-48250474IPR002913START domain
Gene3DG3DSA:3.30.530.202.4E-4357474IPR023393START-like domain
SuperFamilySSF559614.6E-11518703No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 733 aa     Download sequence    Send to blast
MSLIAGQAGI FHRADPAPVV TATAKVVERH NGGVRREEAV EISSDNSGPS CRSRSDDDIG  60
FEGEGNDEDD VNEQRKKKRK KYHRHTAEQI REMEALFKES PHPDEKQRQD LSKQLGLSSR  120
QVKFWFQNRR TQIKAFQERH ENSLLKSEME KLREENKLMR ETIQKTCCPS CGISTSGKES  180
SSSTEEKYLR IENKRLKSEV ENLQSALSKY SGPGTDLPDS GHAEQEPKSS LGLSTSAEVL  240
GLQKSTIMNI ANHAVEELKQ MATVGAPLWV QSVEAGREIL NYDVYMKLFC KEMDTFSSLR  300
PTEAIEASRD TRLVFADLPQ LAQSFMDADK WKELFPTMIS KATTIDIIRN GEGPSRNGAV  360
QLMFAELQML TPMVPSREVY FIRSCKQLSA SQWAIVDVSV DKYMDNAESL FKKCSKRPSG  420
CIIEDTSNGH CKVIWVEHLE CQKIPVHNMY RTIVNSGQAF GASRWMATLQ LQCEHLVFLK  480
ATNVPTKEAN GIATAVGRKS TLTLARRMSS SFCRALGASS HHTWTKVAST TGDDIRVSSR  540
KNLHNPGEPH GQIVCAVSSV WIPVPPRELF DFIRDERHRH EWDMLSNGVP VQSITNLAKG  600
QDRGNSVTIQ ATESKDNPIW LLQDTCTNTF ESTIVYGLVD PTHMRSAVMN GCNSSNTAIL  660
PSGFSILSDG LESRPSVITS QPEDTNSGGS LLTMAIQALV NTSPTAEAVD SVSTLVSCAL  720
SKIRKCLQCE DI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17380QRKKKRKK
27480RKKKRKK
37680KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023875609.10.0homeobox-leucine zipper protein GLABRA 2
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLA0A2N9FB880.0A0A2N9FB88_FAGSY; Uncharacterized protein
STRINGXP_009338062.10.0(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]