PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0109s0026.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

NF-YC

Protein Properties

Length: 206aa MW: 22907.6 Da PI: 5.1148

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0109s0026.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	27.5	6.6e-09	93	182	11	99
NF-YC 11 ekatdfknhelPlarikkilkade.dvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 e++++ ++ +P+ ri+ i k++ d ++s ea ll ka e f+ +l ++ ++ + +++ + ++a+v++ + fl d +p++ Kalax.0109s0026.1.p 93 EEEEEGAKCLFPMNRIRMIAKSEGgDDMRLSHEAIFLLNKASEKFLGHLCEEAYGETVNERKNFVAYDHLSASVSKNQRLCFLSDLIPEK 182 44555667889********986256669******************************************************9975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	2.1E-13	95	183	IPR009072	Histone-fold
Pfam	PF00808	1.2E-9	103	165	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	1.2E-16	103	181	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MRNTRSTPRK GQKPTTKTKK KGHVSNGDIT EAEVASPAAL WSPDSIPEPP YSDSVGSDNK 60 SVAEEEDEVE EGAEEQEKKT VLKQNGKKRK VEEEEEEGAK CLFPMNRIRM IAKSEGGDDM 120 RLSHEAIFLL NKASEKFLGH LCEEAYGETV NERKNFVAYD HLSASVSKNQ RLCFLSDLIP 180 EKISVEEALK ERQLANCDPR APTTN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	77	88	KKTVLKQNGKKR
2	81	89	LKQNGKKRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9QJH2	8e-29	A0A0K9QJH2_SPIOL; Uncharacterized protein (Fragment)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07980.1	8e-25	nuclear factor Y, subunit C10

Link Out ? help Back to Top
Phytozome	Kalax.0109s0026.1.p