PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0109s0026.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NF-YC
Protein Properties Length: 205aa    MW: 22836.5 Da    PI: 5.1148
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0109s0026.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC23.31.3e-07931811199
                NF-YC  11 ekatdfknhelPlarikkilkade.dvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 
                          e++++ ++  +P+ ri+ i k++  d  ++s ea  ll ka e f+ +l   ++ ++ + +r+ +   d  ++v++ +   fl d +p++
  Kalax.0109s0026.2.p  93 EEEEEGAKCLFPMNRIRMIAKSEGgDDMRLSHEAIFLLNKASEKFLGHLCEEAYGETVN-ERKNFVAYDHLSSVSKNQRLCFLSDLIPEK 181
                          44555667889**********986256669************************99985.677777788889999***********9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471133.67E-1195182IPR009072Histone-fold
Gene3DG3DSA:1.10.20.102.0E-14103180IPR009072Histone-fold
PfamPF008081.5E-9103164IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MRNTRSTPRK GQKPTTKTKK KGHVSNGDIT EAEVASPAAL WSPDSIPEPP YSDSVGSDNK  60
SVAEEEDEVE EGAEEQEKKT VLKQNGKKRK VEEEEEEGAK CLFPMNRIRM IAKSEGGDDM  120
RLSHEAIFLL NKASEKFLGH LCEEAYGETV NERKNFVAYD HLSSVSKNQR LCFLSDLIPE  180
KISVEEALKE RQLANCDPRA PTTN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17788KKTVLKQNGKKR
28189LKQNGKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021654289.18e-30glutamic acid-rich protein
TrEMBLA0A0K9QJH22e-27A0A0K9QJH2_SPIOL; Uncharacterized protein (Fragment)
TrEMBLA0A2P5DEY01e-27A0A2P5DEY0_PARAD; Transcription initiation factor
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.19e-24nuclear factor Y, subunit C10