PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0109s0048.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WOX
Protein Properties Length: 166aa    MW: 18923.5 Da    PI: 9.9754
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0109s0048.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox44.62.5e-142511457
                         HHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox 14 eLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                         +Lee +++   ++p+a ++++++++l    +++ ++V++WFqN++a+e++
  Kalax.0109s0048.2.p  2 ILEEIYNRggVKTPNAFQIQQITAHLsfygKIEGKNVFYWFQNHKARERQ 51
                         89*****7779*************************************97 PP
2Wus_type_Homeobox88.57.1e-291521464
    Wus_type_Homeobox 14 kiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                         +iLee+y+  G++tPn+ +iq+ita+L+ yGkie+kNVfyWFQN+kaRerqk
  Kalax.0109s0048.2.p  1 MILEEIYNrGGVKTPNAFQIQQITAHLSFYGKIEGKNVFYWFQNHKARERQK 52
                         69*****9789****************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.297152IPR001356Homeobox domain
SuperFamilySSF466891.18E-7252IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-4251IPR009057Homeodomain-like
PfamPF000465.8E-12251IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MILEEIYNRG GVKTPNAFQI QQITAHLSFY GKIEGKNVFY WFQNHKARER QKLRRKLMQS  60
QSQSHRQLLH HSSLHHQPHW CHYHSSLPSA ALKPLHQGAG KHHQEDCATS RPALADKPIS  120
PQPHCSVIVP QQRPLKTLEL FPLRSTHLNL NADPDDKDPT SPSSC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010259966.11e-34PREDICTED: WUSCHEL-related homeobox 3-like
TrEMBLA0A1U8ADW13e-33A0A1U8ADW1_NELNU; WUSCHEL-related homeobox 3-like
STRINGXP_010259966.15e-34(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.12e-29WOX family protein