PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0109s0067.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 207aa    MW: 22643 Da    PI: 8.8964
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0109s0067.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.000174264123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C  Cgk+F++   L  H  +H
  Kalax.0109s0067.1.p 42 FECRTCGKRFTTFQALGGHRASH 64
                         89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.3E-44069IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.61E-840112No hitNo description
PfamPF139125.6E-114166IPR007087Zinc finger, C2H2
SMARTSM003550.124264IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.5914269IPR007087Zinc finger, C2H2
PROSITE patternPS0002804464IPR007087Zinc finger, C2H2
PfamPF139128.3E-1089114IPR007087Zinc finger, C2H2
PROSITE profilePS501579.14190117IPR007087Zinc finger, C2H2
SMARTSM003551.190112IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MSSSCEETPS TPTVEMAATC LMLLSKLDES HAHPSRDDVR AFECRTCGKR FTTFQALGGH  60
RASHKKPKPD HDCFSQSKKT TAAPPRPKAH ECAICGAEFA LGQALGGHMR RHRDGASGGV  120
LGIGSGDTTT FGAVHVKCKR VCLKMDLNLT PGENDLQTCV PDLKLQLGKR ESEMRMESGT  180
VQEYDLRMQM RKRRRFRDAL LGLVAL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1190194RKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023748803.13e-39zinc finger protein ZAT12-like
TrEMBLA0A2U1LZ136e-40A0A2U1LZ13_ARTAN; Zinc finger, C2H2
STRINGGorai.013G023300.14e-37(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.17e-30C2H2 family protein