PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0109s0073.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WOX
Protein Properties Length: 262aa    MW: 28813.3 Da    PI: 7.7331
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0109s0073.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.81.2e-201474257
                         T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                         ++R+++tkeql  Le+l+e+  r+psae+++ ++k+l    +++ ++V++WFqN++a++++
  Kalax.0109s0073.1.p 14 SSRWNPTKEQLSLLESLYEQgIRTPSAEQIQSITKRLqaygHIEGKNVFYWFQNHKARQRQ 74
                         58*****************99**************************************97 PP
2Wus_type_Homeobox114.94e-371476365
    Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                         ++RW+Pt+eQ+ +Le+ly++G+rtP++e+iq it++L++yG+ie+kNVfyWFQN+kaR+rqkq
  Kalax.0109s0073.1.p 14 SSRWNPTKEQLSLLESLYEQGIRTPSAEQIQSITKRLQAYGHIEGKNVFYWFQNHKARQRQKQ 76
                         79***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.13E-14782IPR009057Homeodomain-like
PROSITE profilePS5007111.4181075IPR001356Homeobox domain
SMARTSM003893.3E-71279IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.5E-91484IPR009057Homeodomain-like
PfamPF000462.6E-181574IPR001356Homeobox domain
CDDcd000869.92E-71671No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MDPSNAGSSS SGPSSRWNPT KEQLSLLESL YEQGIRTPSA EQIQSITKRL QAYGHIEGKN  60
VFYWFQNHKA RQRQKQKMDQ QQMMMCGAVS SNNALNNVVA ANNLNNVDNA AADGAYFNRF  120
YYHSPPPISP SGVAAVAGCA LPLLPGPHSV AYSPYHIARP EFGFYPHCPK IVLPNHISPN  180
INTPMSPHPR HEFHRNLLSL VSQHNAAISE VNNGSVAYPS SAFEQATAMT MTTLDLFPVY  240
PTGILQQRDA RSTSVVSSME DD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59340.11e-21WUSCHEL related homeobox 2