PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0111s0003.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 407aa    MW: 45348.4 Da    PI: 9.2343
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0111s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.74.7e-065577123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         y+C++C++ F r  nL+ H r+H
  Kalax.0111s0003.1.p 55 YVCEICNQGFQRDQNLQMHRRRH 77
                         9*********************9 PP
2zf-C2H214.97.5e-05133154223
                          EETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                          +C +C+k +  +s++k H++t+
  Kalax.0111s0003.1.p 133 SCLKCSKAYAVQSDYKAHLKTC 154
                          8*******************98 PP
3zf-C2H211.10.0013162180523
                          TTTEEESSHHHHHHHHHHT CS
              zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                          dCg++Fsr +++  H+ t+
  Kalax.0111s0003.1.p 162 DCGRVFSRVESFIEHQDTC 180
                          9***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.16E-55278No hitNo description
Gene3DG3DSA:3.30.160.601.6E-55477IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.975577IPR007087Zinc finger, C2H2
SMARTSM003550.00525577IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805777IPR007087Zinc finger, C2H2
PROSITE patternPS01359057137IPR019786Zinc finger, PHD-type, conserved site
SMARTSM0035523096126IPR015880Zinc finger, C2H2-like
SMARTSM0035597132159IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MKMIPSCSSG NPDHLYIITT ANSNSKRKRR PAGTPDPDAE VVSLSPKTLL ESDRYVCEIC  60
NQGFQRDQNL QMHRRRHKVP WKLLKREKEV VRKRVFVCPE ASCLHHDPCH ALGDLVGIKK  120
HFRRKHSNHK QWSCLKCSKA YAVQSDYKAH LKTCGSRGHS CDCGRVFSRV ESFIEHQDTC  180
NLGKLQSHHQ NPTLLLPPAP ASASASACLS QTASSPSPST DTNYSATPWP ISMTTTTPTS  240
SQQHTAISLG DRVDLYHSLD LQLSTSAKPT NQPPVKLSPI TNSNDNYSST HQLQLSIGST  300
TDLCDKSETN METHQSVSIR VTNNIMEEEE VMTLASVAER KQAKRLIVMA EKELAYARRI  360
RQQAQSELQK AKTLRDNAVK QITSTLLEIT CHSCKIQFQL GRPANA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-17128181356Zinc finger protein JACKDAW
5b3h_F5e-17128181356Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002534293.11e-165protein SHOOT GRAVITROPISM 5
SwissprotF4IPE31e-131IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5
TrEMBLB9T7S41e-164B9T7S4_RICCO; Nucleic acid binding protein, putative
STRINGXP_002534293.11e-165(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.11e-115C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kim JY,Ryu JY,Baek K,Park CM
    High temperature attenuates the gravitropism of inflorescence stems by inducing SHOOT GRAVITROPISM 5 alternative splicing in Arabidopsis.
    New Phytol., 2016. 209(1): p. 265-79
    [PMID:26256266]
  3. Ryu JY,Kim JY,Park CM
    Adaptive thermal control of stem gravitropism through alternative RNA splicing in Arabidopsis.
    Plant Signal Behav, 2015. 10(11): p. e1093715
    [PMID:26452406]
  4. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]
  5. Shi H, et al.
    Zinc finger of Arabidopsis thaliana 6 is involved in melatonin-mediated auxin signaling through interacting INDETERMINATE DOMAIN15 and INDOLE-3-ACETIC ACID 17.
    J. Pineal Res., 2018. 65(2): p. e12494
    [PMID:29607541]