PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0111s0046.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ARF
Protein Properties Length: 552aa    MW: 61148.7 Da    PI: 6.4632
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0111s0046.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B364.71.4e-20118219299
                          EEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                   B3   2 fkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                           k+lt+sd+++ g ++ p+ +ae++       + ++ +   lt++d +g  W +++i+r++++r++lt+GW++Fv+ + L +gD v+F++
  Kalax.0111s0046.1.p 118 TKILTQSDANNGGGFSAPRYCAEAIfpalnyqEDPPVQ--NLTITDVQGGDWIFRHIFRGTPKRHLLTTGWSKFVNNKMLVAGDAVIFMR 205
                          699**************************996666656..69999********************************************6 PP

                          -SSSEE..EEEEE-S CS
                   B3  85 dgrsefelvvkvfrk 99 
                          d+  +++l+++++r+
  Kalax.0111s0046.1.p 206 DN-LTGKLYIGIRRQ 219
                          54.9999******97 PP
2Auxin_resp63.58.2e-22261344283
           Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgv.sdldpvrWpnSkWrsLk 83 
                          a +a  +s Fev+ +Pr ++++Fvv+++ v +al+ +++vGm +km + tedss+  l +G v+ v + l+  +W++S+W++L+
  Kalax.0111s0046.1.p 261 AMRAGRGSHFEVILYPRIGSPDFVVNANVVDRALSWRWAVGMGVKMTVATEDSSQSMLlQGHVSVVmNVLERGQWRGSPWKMLQ 344
                          66778899***********************************************9999**998772557889*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.1E-23114220IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.7E-29116224IPR015300DNA-binding pseudobarrel domain
CDDcd100172.39E-17116218No hitNo description
SMARTSM010199.4E-14117220IPR003340B3 DNA binding domain
PROSITE profilePS5086311.744117220IPR003340B3 DNA binding domain
PfamPF023626.2E-18118219IPR003340B3 DNA binding domain
PfamPF065073.8E-19261344IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MFPINFPAAN TVQIDPYLWK ACAGANFKVP SVDDNVYYFA EGHAEQCDSP PPVAQLAFPI  60
VPCRVLHVRF FADRMTDEVF ASVLLQPVGC EFRGALPASG SALGAQVGRE GSRIDSYTKI  120
LTQSDANNGG GFSAPRYCAE AIFPALNYQE DPPVQNLTIT DVQGGDWIFR HIFRGTPKRH  180
LLTTGWSKFV NNKMLVAGDA VIFMRDNLTG KLYIGIRRQS GRNENRSLLS GAGQGTGEDM  240
DEGLWRAGSR GVSARFVKEA AMRAGRGSHF EVILYPRIGS PDFVVNANVV DRALSWRWAV  300
GMGVKMTVAT EDSSQSMLLQ GHVSVVMNVL ERGQWRGSPW KMLQVTWVDP EHRQNVERVS  360
PWQVEYVEHT APLQPIHNPI ELRDPHVQPL TTRNREPLLI MGQEPHSTKA QGDQRTRNFI  420
NPDIHLASMQ GARHLSDVCD LIGGDTHQTQ SEDMFSRSDM SLFRSRITDV NFGGHQLSNF  480
PAERHNSMRS FGNEVGNTLP NGGTNSIQLF GKIIYVKNPI ENQPDDAPCL EFDSSKGDNE  540
TEGMENQSHA S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-551436551388Auxin response factor 5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-114auxin response factor 17