PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0112s0011.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

LBD

Protein Properties

Length: 215aa MW: 23456.9 Da PI: 8.7322

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0112s0011.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	121.9	3.5e-38	23	120	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 aCaaCk++rrkCa++C+lapyfp+e++++f +hklFG+sn+lk lk++p+ r++am+s++++Aear dPv G+++v+ +l +q+e Kalax.0112s0011.1.p 23 ACAACKYQRRKCAPGCPLAPYFPSERASEFMSAHKLFGVSNILKALKKVPPGARDAAMNSIMFHAEARRADPVGGCYAVVESLVKQIEVY 112 7*************************************************************************************** PP DUF260 91 kaelallk 98 +ael+++ Kalax.0112s0011.1.p 113 QAELDHVM 120 *99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.349	22	123	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.8E-36	23	119	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MNCNLKIPDN YSRSSALTSQ SQACAACKYQ RRKCAPGCPL APYFPSERAS EFMSAHKLFG 60 VSNILKALKK VPPGARDAAM NSIMFHAEAR RADPVGGCYA VVESLVKQIE VYQAELDHVM 120 REVYAFRALA AAQAEPRLVP GHVPRADVSV NNVGCQIKLE KQSSSMADEK QFYRTVETTP 180 FDGKGAEACL VRLGENWKPA FAAHDVGLKI FTNT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-28	24	126	12	114	LOB family transfactor Ramosa2.1
5ly0_B	5e-28	24	126	12	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012453880.1	6e-42	PREDICTED: LOB domain-containing protein 22-like
Refseq	XP_016700669.1	6e-42	PREDICTED: LOB domain-containing protein 22-like
Swissprot	Q9LRW1	9e-39	LBD22_ARATH; LOB domain-containing protein 22
TrEMBL	A0A0D2VJ03	1e-40	A0A0D2VJ03_GOSRA; Uncharacterized protein
TrEMBL	A0A1U8KIZ9	1e-40	A0A1U8KIZ9_GOSHI; LOB domain-containing protein 22-like
TrEMBL	A0A2P5QCU5	1e-40	A0A2P5QCU5_GOSBA; Uncharacterized protein
STRING	Gorai.011G064500.1	2e-41	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	4e-41	LOB domain-containing protein 22

Link Out ? help Back to Top
Phytozome	Kalax.0112s0011.1.p

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]