PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0113s0009.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

TCP

Protein Properties

Length: 340aa MW: 36110.5 Da PI: 8.5212

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0113s0009.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	109.7	4.3e-34	86	175	2	90
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgka 90 a+++++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t+ WLl+ a++ai e+tgt++ +a + ++ + + +sssg++ Kalax.0113s0009.1.p 86 ATGRRSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEQAIYEATGTGTVPAIAIsVGGTLKIPTTTSSSGES 175 67899***********************************************************77777333211222222222222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	6.3E-28	91	171	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	25.205	92	146	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MMNHHHRQID PENDEDDDGA DASDLSRSTG AKNNGSSNGD SKPYPETLSF RSHLLKQEPS 60 DSDHFRQHSR SFGMVPVPMQ MPVTVATGRR STKDRHTKVE GRGRRIRIPA TCAARIFQLT 120 RELGHKSDGE TVRWLLEHAE QAIYEATGTG TVPAIAISVG GTLKIPTTTS SSGESSVKKM 180 KRPSTSEFYD VSVSSGLRHV AMSPIPQGLV PIWAVGNPPG MMIPSNAVAA GGFWMIRQPP 240 AMPAATSSQP QLWTISPSVT PVFNMAGEPA PADVIAPSSA LDSSLVGANK SSKQLTTMAP 300 SHSSSSSASK TQMAVEIFDR GEALQLQLMG GSSSPHSSS*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00635	PBM	Transfer from PK14653.1	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002282409.1	4e-98	PREDICTED: transcription factor TCP9
Refseq	XP_010661412.1	4e-98	PREDICTED: transcription factor TCP9
TrEMBL	F6HUI6	3e-96	F6HUI6_VITVI; Uncharacterized protein
STRING	VIT_02s0025g04590.t01	6e-97	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	2e-58	TCP family protein

Link Out ? help Back to Top
Phytozome	Kalax.0113s0009.1.p