PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0114s0082.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family M-type_MADS
Protein Properties Length: 214aa    MW: 23611.7 Da    PI: 8.6863
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0114s0082.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.66e-221663249
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                         +i+ k   qvtfskRr g++KKA+EL++LC++e+a+i+fs+ gk + +
  Kalax.0114s0082.1.p 16 KIKKKNHLQVTFSKRRSGLFKKASELCTLCGVEIAIIVFSPAGKAFSF 63
                         58889999***********************************97766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-30766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.193767IPR002100Transcription factor, MADS-box
CDDcd002658.42E-35884No hitNo description
SuperFamilySSF554551.31E-27892IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-18929IPR002100Transcription factor, MADS-box
PfamPF003192.0E-241663IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-182944IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-184465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009559Biological Processembryo sac central cell differentiation
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MAKKTSLGRQ RIEITKIKKK NHLQVTFSKR RSGLFKKASE LCTLCGVEIA IIVFSPAGKA  60
FSFGHPNVES IIQKYLDHPS GKASDAHPTS ATRELNNQLT QVTSELEAER KKSEAFTNLR  120
SSNAGQFWWE APVEEMGWEE LEQLSHWLSQ LKRSVAMAIS VQAESFTTTS SATGFGNNVF  180
GNLFEDKASD MLLAAVESTS ALTYNYGYGN AFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-16794192MEF2 CHIMERA
6byy_B2e-16794192MEF2 CHIMERA
6byy_C2e-16794192MEF2 CHIMERA
6byy_D2e-16794192MEF2 CHIMERA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088151.14e-70agamous-like MADS-box protein AGL62
TrEMBLA0A2N9J8T03e-68A0A2N9J8T0_FAGSY; Uncharacterized protein
STRINGXP_009621249.15e-66(Nicotiana tomentosiformis)
STRINGXP_009628464.15e-66(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.17e-53AGAMOUS-like 61