PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0114s0120.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bHLH

Protein Properties

Length: 172aa MW: 17835.4 Da PI: 9.8775

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0114s0120.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18.1	5e-06	52	97	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ah + r R +++ +++++L++l+ + +K + a++L +A+ YIk L Kalax.0114s0120.1.p 52 AHAAKPRPRKEKLGERIATLQQLVSPF-----GKTDTASVLHEAMSYIKFL 97 68888899999************98.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.747	48	97	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.46E-13	50	110	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.8E-9	52	106	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.81E-6	60	102	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MVDVEYLLLL CFLHVVVAQR KRTGSGRNPV GGGASAEGKK TRSEKPAAAA PAHAAKPRPR 60 KEKLGERIAT LQQLVSPFGK TDTASVLHEA MSYIKFLHDQ VQVLSSPYLH SSPNQGGGDG 120 GAVGLRSRGL CLVPVSCTAQ VDGSTNGADF WAPAAGINIS SCVNLASSTK L*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027366926.1	2e-49	transcription factor bHLH113 isoform X1
Swissprot	Q9LT67	2e-38	BH113_ARATH; Transcription factor bHLH113
TrEMBL	A0A151U7S7	1e-45	A0A151U7S7_CAJCA; Transcription factor bHLH113 family
STRING	GLYMA10G40710.3	3e-45	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31730.1	9e-38	bHLH family protein

Link Out ? help Back to Top
Phytozome	Kalax.0114s0120.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]