PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0115s0007.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 907aa    MW: 101638 Da    PI: 9.3611
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0115s0007.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.51.3e-074580340
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                          W+  E +++++a +++G++ Wk++a+ +   R+ +++
  Kalax.0115s0007.2.p 45 QWSNKELQQFYEAYRKYGTN-WKKVAAAVR-SRSVEMV 80
                         6*****************99.********9.9998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.00364290IPR001005SANT/Myb domain
SuperFamilySSF466892.84E-94489IPR009057Homeodomain-like
PfamPF002499.6E-74580IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-44579IPR009057Homeodomain-like
CDDcd001673.34E-54680No hitNo description
PfamPF065841.4E-32588688IPR033471DIRP domain
SMARTSM011356.9E-59588689IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 907 aa     Download sequence    Send to blast
MAPSRKTGNA NKQSPTANKI VAKKDEEDAK TKQKKRKLGD MLGSQWSNKE LQQFYEAYRK  60
YGTNWKKVAA AVRSRSVEMV EALYSMNRAY LSLPEGTASV AGLIAMVTDH YCVMEKSDSE  120
QESNEGRDQE APQKAQKRSR RKFRNSKFKD LDHNLPDHSP SRFVGSTSDC LSLLKANLPG  180
SEPRVVGKRT PRVPVVHTSD KDFWDKNFSA KPGRKFKMNA DDHVAHEIAL ALTKASQKDK  240
SPRISQSNRA SKRKIGNVSS PAKSDDRMHF IEGTSAQLQG SARDEQDHQG SMGSIDVDNL  300
RSGSTLRDRE GFGTLDIQKK GLRSNGKKFI AETGNDHLDD MKEACSGTEE QNSSAFSKNR  360
GFENPKQLIS KGQKQRNKKI LFDEDESAAF EALNTLADLS LTMPEPFLDN DNRGADINTS  420
SAKSKGNNSF GGDEDTTIKF ISSDRGGNVG TIPDSEDKTG IRKRKPKSLP FCMENLKMEP  480
HLYHTGNFPN SEDVEDANKS LSKGHHKEGE HVNASTLNVS RESEGDFSSK NRNWRKRDLP  540
KSVNLKDTNY SVQVESGRPT DGILNLKAKL ANCLSWRKAQ RWCTFEWFYS AIDYPWFARR  600
EFVEYLDHVG LGHIPRLTRV EWGVIRSSLG KPRRFSQQFL KEEKEKLNQY RESVRNHYTE  660
LRLGAREGLP TDLARPLSVG QRVIAIHPKT REIHDGSVLT VDRSRCHVQF DKPDLGVEFV  720
MDIDCMPLNP LENMPASLAI NKLSENHKGV KLNGLASHHS ASLHPNGNID NPDDPLLRPL  780
SDSLVDNSKK TVKDNITSSN VQAKARSSGP ISGQEAADQP SFLAQSKEAD VKALYEMTCA  840
LDKKEAIVSE FKRMNDEVEE NKRSDSLFEV PESFSKRYAS VLVQLDEVND QASILSFMIH  900
KLLLSF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023908919.10.0protein ALWAYS EARLY 3 isoform X1
RefseqXP_023908920.10.0protein ALWAYS EARLY 3 isoform X1
RefseqXP_023908921.10.0protein ALWAYS EARLY 3 isoform X1
RefseqXP_023908922.10.0protein ALWAYS EARLY 3 isoform X1
TrEMBLA0A2I4F3380.0A0A2I4F338_JUGRE; protein ALWAYS EARLY 3 isoform X1
STRINGEOY064520.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.20.0DNA binding