PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0116s0045.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 563aa    MW: 61865.1 Da    PI: 8.7666
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0116s0045.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.87.2e-1736120898
                          -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                   B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                          + +++sgrl +p kf ++++g   +++ + l  + g++W+v l   ++ ++ +l +GW++Fv++  ++ gD++vF+++g+ +f   v +f
  Kalax.0116s0045.2.p  36 APHSSSGRLEIPHKFNQHIEGR--TNVWVLLSGRGGKVWRVGL--VRQHQTLFLNEGWSGFVRDSSVELGDTLVFEYNGDWQF--EVYIF 119
                          6678899********9888877..678899999**********..9*******************************998888..88888 PP

                          - CS
                   B3  98 r 98 
                          +
  Kalax.0116s0045.2.p 120 D 120
                          7 PP
2B344.52.8e-14276366598
                          -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                   B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                          ++  +v+ s  l +p kf +eh   ++++++++l++ +g  W+v+   + k  + +++ +GW  Fv+an++++gD ++F+l+++   +++
  Kalax.0116s0045.2.p 276 MKIFNVSGSFTLKIPYKFSTEHL--PQCKTKVVLQTCEGSCWTVNSVPTTKVHTcHTFCGGWVAFVRANHIEAGDACIFQLVSE--CKML 361
                          55557888899***********6..458899**************955333333588889********************9873..3469 PP

                          EEEE- CS
                   B3  94 vkvfr 98 
                          v+++r
  Kalax.0116s0045.2.p 362 VHILR 366
                          99987 PP
3B3452e-14451542195
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                          f+ ++++ +v+ s  l +p +f ++h   + ++++l+l++ +g+ W v+     +++ ++++ +GW  Fv+ n+++ gD+++F+l+g+ +
  Kalax.0116s0045.2.p 451 FVRIMKKFNVSGSFTLKIPHQFSTSHL--PGCKTELVLRNANGEPWAVNSVPaANRPTMHTICGGWMAFVRGNNIQLGDILIFELVGEGQ 538
                          56677778899999*********9994..458889**************9557999999**************************99655 PP

                          E..EEE CS
                   B3  90 felvvk 95 
                             +v+
  Kalax.0116s0045.2.p 539 L--NVH 542
                          4..444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.3E-2323124IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.1E-2224124IPR015300DNA-binding pseudobarrel domain
CDDcd100178.57E-1629120No hitNo description
PROSITE profilePS5086314.26929122IPR003340B3 DNA binding domain
SMARTSM010195.9E-1331122IPR003340B3 DNA binding domain
PfamPF023622.1E-1436121IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.6E-21264366IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-22265366IPR015300DNA-binding pseudobarrel domain
CDDcd100171.78E-18270366No hitNo description
PROSITE profilePS5086312.266272368IPR003340B3 DNA binding domain
PfamPF023621.2E-12272366IPR003340B3 DNA binding domain
SMARTSM010192.2E-7272368IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-20442547IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-21445547IPR015300DNA-binding pseudobarrel domain
CDDcd100171.65E-16449542No hitNo description
PfamPF023625.9E-12451542IPR003340B3 DNA binding domain
PROSITE profilePS5086313.239451547IPR003340B3 DNA binding domain
SMARTSM010197.1E-10451547IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MRNSAKQKQA SKMATATTSA VKSSDGRKPH FIVTFAPHSS SGRLEIPHKF NQHIEGRTNV  60
WVLLSGRGGK VWRVGLVRQH QTLFLNEGWS GFVRDSSVEL GDTLVFEYNG DWQFEVYIFD  120
GSGCEKEVRE CMGNLGPNSR KKRERDEDES SGCVVKKKES IVCRSCTVDC VNEEPADLSA  180
AECQPGAPVG EPLALIVYEE PGPSNLSNGH PNYPPATALP SLCKFQSGTS GSTTKYKDVA  240
YKHTSQGKGS KLKFSASEEK ISRSFKSEFP HFVRVMKIFN VSGSFTLKIP YKFSTEHLPQ  300
CKTKVVLQTC EGSCWTVNSV PTTKVHTCHT FCGGWVAFVR ANHIEAGDAC IFQLVSECKM  360
LVHILREGRQ ISESNGGEKS KFRSLASLSN DIKKLGLGSK NSSHGYGLPQ EAVDWKAERT  420
GCGIVDSHSR HSMSAEEERV AQSFASRFPY FVRIMKKFNV SGSFTLKIPH QFSTSHLPGC  480
KTELVLRNAN GEPWAVNSVP AANRPTMHTI CGGWMAFVRG NNIQLGDILI FELVGEGQLN  540
VHHTSASGYA STHANLTAYH SL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06220.12e-15B3 family protein