PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0116s0047.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 415aa    MW: 47771.7 Da    PI: 9.0047
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0116s0047.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.94.9e-151191187
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                   B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87
                         ffkv    +++k+  + +p+ f e+++ + ++  t  l  +sg++W v++  +  ++   +t+GW++Fv++n +++g+f+ Fkl g+
  Kalax.0116s0047.1.p 11 FFKVYFADHSFKQ--MKIPRAF-EDYMDE-RKFGTAELAGRSGQTWLVEV--DYDGKDLCFTDGWQDFVEDNMVQDGEFLFFKLLGN 91
                         7888877777766..8*****9.588544.45559***************..778888*************************9886 PP
2B356.74.4e-18163254196
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          f+k  t s+    + l++p  fa+eh+++ +++ +++l+++++ sW+v++   +++g++ l +GW  F+++n+L+ gD++ F+l+gr   
  Kalax.0116s0047.1.p 163 FEKHITISNIEHGHYLRIPSYFAQEHSLNYKSNEKMVLRTSRNSSWKVNI--INRGGEISLCRGWAAFARENNLRLGDVCNFELVGR--L 248
                          677777777777899***********88888999****************..999999*************************9984..5 PP

                          ..EEEE CS
                   B3  91 elvvkv 96 
                          e++v+v
  Kalax.0116s0047.1.p 249 EMLVHV 254
                          556665 PP
3B353.25.4e-17314409296
                          EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                   B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrse 89 
                          +  +++++v ks+ l +p  f++e+++  e++ +++l++e+   W + +i++k+ ++  + l++GW +Fv++n++kegD++ F+l++r e
  Kalax.0116s0047.1.p 314 VALMKKHHVEKSA-LNIPAWFFRENSLHYERNEKMVLRSEKDSLWLLSIIHSKYNNKtlCRLSGGWIDFVRDNNIKEGDTCKFELVNRLE 402
                          4455556666665.***********99999999****************99777777679999*********************997644 PP

                          E..EEEE CS
                   B3  90 felvvkv 96 
                           +++++ 
  Kalax.0116s0047.1.p 403 MKFHIMP 409
                          4344444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.39E-177104IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.2E-188104IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.4789102IPR003340B3 DNA binding domain
CDDcd100172.89E-159100No hitNo description
SMARTSM010196.2E-1111102IPR003340B3 DNA binding domain
PfamPF023623.4E-131191IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.2E-22160256IPR015300DNA-binding pseudobarrel domain
CDDcd100172.46E-16161254No hitNo description
SuperFamilySSF1019366.08E-20161255IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.1E-12163260IPR003340B3 DNA binding domain
PfamPF023621.6E-15163254IPR003340B3 DNA binding domain
PROSITE profilePS5086313.944163258IPR003340B3 DNA binding domain
SuperFamilySSF1019363.73E-19307409IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.4E-20307409IPR015300DNA-binding pseudobarrel domain
CDDcd100171.15E-16311407No hitNo description
PROSITE profilePS5086312.323312411IPR003340B3 DNA binding domain
SMARTSM010191.6E-16313411IPR003340B3 DNA binding domain
PfamPF023621.9E-14313409IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MNAEVDNLPE FFKVYFADHS FKQMKIPRAF EDYMDERKFG TAELAGRSGQ TWLVEVDYDG  60
KDLCFTDGWQ DFVEDNMVQD GEFLFFKLLG NLMFSFIIYD ETMCEKEAAF NGKCSRGREA  120
VEEPMGLKPV KRRNMGCSQP EGSLFTSKDK TAVKTSISVK PTFEKHITIS NIEHGHYLRI  180
PSYFAQEHSL NYKSNEKMVL RTSRNSSWKV NIINRGGEIS LCRGWAAFAR ENNLRLGDVC  240
NFELVGRLEM LVHVAHQDKV IEEKQLNVAA PKIRPSERAV GVSQPKLRQG LPIIAERHKA  300
AGRSRPSPGK PSFVALMKKH HVEKSALNIP AWFFRENSLH YERNEKMVLR SEKDSLWLLS  360
IIHSKYNNKT LCRLSGGWID FVRDNNIKEG DTCKFELVNR LEMKFHIMPR SKQD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126132LKPVKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.12e-18B3 family protein