PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0116s0057.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Protein Properties

Length: 236aa MW: 26814.2 Da PI: 10.5593

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0116s0057.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	43.8	4.6e-14	136	225	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+ ++ps+v++ +l lp f+++h + ++++ +tl de+g ++ ++ + l++GWk+F+ a +L +gD +vF+l++ + f Kalax.0116s0057.1.p 136 FVRPMLPSHVSSCFWLGLPSYFCKQHL-P-KRDTVMTLVDEKGDEYPTIW--LPRKTG--LSGGWKGFAVARELVDGDALVFQLISPTAF 219 778899***************9995.3.36679********999..555544..**********************987777 PP ..EEEEE- CS B3 91 elvvkvfr 98 +v ++r Kalax.0116s0057.1.p 220 --KVYIVR 225 ..777766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.9E-18	128	225	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.35E-22	130	227	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	8.82E-26	134	225	No hit	No description
SMART	SM01019	4.3E-21	136	227	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.406	136	227	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.1E-12	136	225	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MTRPHTTRSS KMVMHSYEQC RQKRLEENKK RMEALNLPQL AKTLREISTP PRPTPAKRRP 60 YEKQLVAVRR SPRVANMPAG PVYVEVDVAV GRLSMPRRLS KPRAMLGAYA TNEAREWSIS 120 RPEELQSALD QAYPSFVRPM LPSHVSSCFW LGLPSYFCKQ HLPKRDTVMT LVDEKGDEYP 180 TIWLPRKTGL SGGWKGFAVA RELVDGDALV FQLISPTAFK VYIVRVEGFK EGTKQ*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022772861.1	3e-88	B3 domain-containing protein At5g42700
Swissprot	Q9FMZ4	8e-63	Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBL	A0A2P5ASS8	4e-85	A0A2P5ASS8_PARAD; B3 DNA binding domain containing protein
STRING	XP_008220213.1	2e-85	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	1e-62	B3 family protein

Link Out ? help Back to Top
Phytozome	Kalax.0116s0057.1.p

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]