PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0117s0006.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family M-type_MADS
Protein Properties Length: 255aa    MW: 26778.7 Da    PI: 10.872
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0117s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.61.4e-1766112349
                          --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
               SRF-TF   3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 
                           + +s r vtfskR+ g++ KA+EL +LC+++ a+iifs+ gk + +
  Kalax.0117s0006.1.p  66 LDKQSSRLVTFSKRKSGLFAKASELATLCAVQCAMIIFSPGGKAFSF 112
                          578999************************************97766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-2156115IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.4656116IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.06E-2257126IPR002100Transcription factor, MADS-box
PRINTSPR004047.6E-155878IPR002100Transcription factor, MADS-box
PfamPF003193.9E-1967112IPR002100Transcription factor, MADS-box
PRINTSPR004047.6E-157893IPR002100Transcription factor, MADS-box
PRINTSPR004047.6E-1593114IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MAMVSNTGSI NIGITTANAS LGVEISKSAD VAALPTDSLT TDVLHGGASG GPKRTKGRLK  60
LPLKKLDKQS SRLVTFSKRK SGLFAKASEL ATLCAVQCAM IIFSPGGKAF SFGHPSTDEV  120
VKRYMWGKNA PPIPSNNPLT QNLLEAHRRA NLKALNAQLS EVSLACEAEK KKGKMPGRSK  180
LSRASWNELL GKMNSSELEN VKMRINSLKA HVNNLSGQHA TAGGPRPTGQ LSHPGFGHNL  240
GMDGAGSSSG SFFGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-31AGAMOUS-like 62