PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0117s0022.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

ZF-HD

Protein Properties

Length: 94aa MW: 10041.3 Da PI: 9.0508

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0117s0022.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	98.5	5e-31	27	82	4	58
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 v YkeC+kNhAa +GghavDGC+Efm+ ee g a+al CaACgCHR+FHR+ e Kalax.0117s0022.1.p 27 VIYKECQKNHAAGVGGHAVDGCREFMAMGAEEtGGADALVCAACGCHRSFHRKVAE 82 79***********************98888899****************876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	2.0E-12	1	83	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	7.5E-27	27	81	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	24.853	29	80	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.0E-25	29	79	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 94 aa Download sequence Send to blast
MRKKQVVVRT KEPSKNSNSS NQIYRYVIYK ECQKNHAAGV GGHAVDGCRE FMAMGAEETG 60 GADALVCAAC GCHRSFHRKV AENMPASFSS SSA*

Functional Description ? help Back to Top
Source	Description
UniProt	Inhibits zinc finger homeodomain (ZHD) transcription factors by interacting with them to prevent both their nuclear localization and their DNA-binding properties. Involved in integrating signals from multiple hormones by regulating the expression of specific genes. Promotes the formation of ectopic shoot meristems on leaf margins. {ECO:0000269\|PubMed:21455630}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015879406.1	2e-33	mini zinc finger protein 2
Swissprot	Q2Q493	9e-24	MIF3_ARATH; Mini zinc finger protein 3
TrEMBL	A0A2N9G5H9	2e-33	A0A2N9G5H9_FAGSY; Uncharacterized protein
STRING	VIT_14s0108g00760.t01	4e-30	(Vitis vinifera)
STRING	EOY03457	6e-30	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18835.1	8e-19	mini zinc finger

Link Out ? help Back to Top
Phytozome	Kalax.0117s0022.1.p