PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0119s0023.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

NAC

Protein Properties

Length: 384aa MW: 42031.8 Da PI: 7.8753

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0119s0023.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	172.4	1.4e-53	20	147	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhPtdeelvv+yLkkkv++++l++ ++i+evd+yk++Pw+Lp k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk Kalax.0119s0023.1.p 20 LPPGFRFHPTDEELVVHYLKKKVTSSPLPV-SIIAEVDLYKYDPWELPGKATFGEHEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDK 108 79**************************.89***********8888899******************************* PP NAM 91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +v+++ ++++vg+kk Lvfy g+ p+g+k++W+mheyrl Kalax.0119s0023.1.p 109 PVMTAsGTQKVGVKKALVFYGGKPPRGVKSNWIMHEYRL 147 9977888**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.12E-64	17	183	IPR003441	NAC domain
PROSITE profile	PS51005	62.267	20	183	IPR003441	NAC domain
Pfam	PF02365	2.4E-28	21	147	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence Send to blast
MESTDSSAGG GGSGSHHLNL PPGFRFHPTD EELVVHYLKK KVTSSPLPVS IIAEVDLYKY 60 DPWELPGKAT FGEHEWYFFS PRDRKYPNGA RPNRAATSGY WKATGTDKPV MTASGTQKVG 120 VKKALVFYGG KPPRGVKSNW IMHEYRLVDN KTTSNNRHLA FDLASKKNSL RLDDWVLCRI 180 YKKSNSSKGI MDNEDDRPGD SSIMDEMILS SSVPPSLNVA GDNKFYLPNN LSSSSTFNNT 240 SAASLVDNGQ ALYERGLMST ASNNNNNGSF SMSDQLVSQS ANSFSLKRPL PHPHLFCWLD 300 GEQEQAAATM GGDHNGPSSK RGGHLLQGDS SLSAMVSLHN HQAPLQLPSQ TASLLHQLSH 360 VGDDESYRQH YPLAGASLNW YLT*

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence Send to blast

MESTDSSAGG GGSGSHHLNL PPGFRFHPTD EELVVHYLKK KVTSSPLPVS IIAEVDLYKY  60
DPWELPGKAT FGEHEWYFFS PRDRKYPNGA RPNRAATSGY WKATGTDKPV MTASGTQKVG  120
VKKALVFYGG KPPRGVKSNW IMHEYRLVDN KTTSNNRHLA FDLASKKNSL RLDDWVLCRI  180
YKKSNSSKGI MDNEDDRPGD SSIMDEMILS SSVPPSLNVA GDNKFYLPNN LSSSSTFNNT  240
SAASLVDNGQ ALYERGLMST ASNNNNNGSF SMSDQLVSQS ANSFSLKRPL PHPHLFCWLD  300
GEQEQAAATM GGDHNGPSSK RGGHLLQGDS SLSAMVSLHN HQAPLQLPSQ TASLLHQLSH  360
VGDDESYRQH YPLAGASLNW YLT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-73	17	186	12	171	Stress-induced transcription factor NAC1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000305}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By Jasmonic acid (JA). {ECO:0000269\|PubMed:16805732}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021606877.1	1e-120	NAC transcription factor 56
Swissprot	Q9LD44	1e-101	NAC56_ARATH; NAC transcription factor 56
TrEMBL	A0A0M5JAD3	1e-118	A0A0M5JAD3_MANES; NAC transcription factors 48
STRING	cassava4.1_022751m	1e-119	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15510.1	4e-99	NAC domain containing protein 2

Link Out ? help Back to Top
Phytozome	Kalax.0119s0023.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]