PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0120s0027.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 329aa    MW: 36364.1 Da    PI: 9.725
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0120s0027.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH491.1e-15155201455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           hn+ Er+RRdriN+++ +L++l+P+a      K +Ka++L ++++Y+k+Lq
  Kalax.0120s0027.1.p 155 VHNQSERKRRDRINQKMRTLQKLVPNA-----SKTDKASMLDEVIKYLKQLQ 201
                          5*************************9.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.238151200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.03E-19154223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-16155208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-13155201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.86E-16156205No hitNo description
SMARTSM003532.6E-16157206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MEPFYGLNDY DQVAELTWEN GQLGFQGLAP ATHGAKPTWG TANETLESIV QQGSTVFHQP  60
QQHSNLNHIH YPAANTNPCS SFAASSTWLE SDHRHARVES LKRSSLKESN TVIMTRATED  120
DLVYHYGTDN KNEGHDSKGG AGRSSSTRRS RTAAVHNQSE RKRRDRINQK MRTLQKLVPN  180
ASKTDKASML DEVIKYLKQL QGQIQMMNYV RNMPPMMVPL AMQQQQNQMS LLARTGMNLN  240
MGLMGMGGML NMMHMPRSVP LQSAPHPSGT PSTNTTFPPS FLMVPPMIPT PPISQSMNTD  300
LFNKMAAFCA QQANSSATAI QEKTSPTS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
198103ESLKRS
2159164ERKRRD
Functional Description ? help Back to Top
Source Description
UniProtRequired during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015571978.13e-74transcription factor PIF7 isoform X2
SwissprotQ8GZ388e-37UNE10_ARATH; Transcription factor UNE10
TrEMBLA0A061G4L11e-70A0A061G4L1_THECC; DNA binding protein, putative isoform 4
STRINGEOY219711e-69(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.18e-33bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]