PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0122s0006.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family Trihelix
Protein Properties Length: 608aa    MW: 67381.1 Da    PI: 6.3767
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0122s0006.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix43.21e-13861343787
             trihelix  37 kmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                          km e g++rs+k+Ckek+en+ k++k++keg++++   + +t+++fdqlea
  Kalax.0122s0006.2.p  86 KMGELGYHRSAKKCKEKFENVYKYHKRTKEGRSSK--SDGKTYRFFDQLEA 134
                          899******************************97..45567*******85 PP
2trihelix92.64e-29410494186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          rW+k ev +L+++r++ e +++++  k+p Wee+s+ mr+ g++r++k+Ckekwen+nk++kk+ke++k+r +e+s+tcpy++ l+
  Kalax.0122s0006.2.p 410 RWPKAEVETLVKLRTSFEIKYQENGPKGPFWEEISAGMRSLGYNRNAKRCKEKWENINKYFKKVKESNKQR-PEDSKTCPYYHLLD 494
                          8********************************************************************98.99*********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007173269109IPR001005SANT/Myb domain
PfamPF138375.0E-885135No hitNo description
PROSITE profilePS500907.213403467IPR017877Myb-like domain
SMARTSM007170.0038407469IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-4408466IPR009057Homeodomain-like
CDDcd122032.14E-25409474No hitNo description
PfamPF138372.6E-20409495No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    Send to blast
MMLGGGGGGD GASMPVSAAG GGGDNTASNN NNSSVGGVVF GEDQETHNST SGNNNMMMMM  60
EDGDRNNSGG NRWPRQETLA LLKIRKMGEL GYHRSAKKCK EKFENVYKYH KRTKEGRSSK  120
SDGKTYRFFD QLEALDQLQP FQMPPPPVQQ PPQVSHSKAP PFLMQPPPAL QTPTTISFSQ  180
HQPCTNNITN SNPITTTAPI TPVPTNPTII SPNYQSGATN FMVSTSSSTS SDDLQQRRRT  240
GKKRKWRDFF EKLMRDVVDK QEELQNKFLR SIEMRERERS MREEAWRMEE MARLNREHEV  300
LVQERAAAAA KDAAVIAFLQ KIAGQQPQTQ PQPQPQPLLQ PLPPQPKQQP PPPPHTIQLN  360
PSTTPPPPQR QPPPQQPQPL NVMKPDSNAA GAQNNLAIVC GSTQPASSSR WPKAEVETLV  420
KLRTSFEIKY QENGPKGPFW EEISAGMRSL GYNRNAKRCK EKWENINKYF KKVKESNKQR  480
PEDSKTCPYY HLLDTIYKEK KGGGGGGDNI NSYLPPHSSN SLMAPPLMVQ PEQQWPLAPQ  540
AQARHQNEQG EDQDDMLDED ELDEDMEDEE EEGDEEDNNG GTYEVVATAS NGAPPAATGS  600
LGTTAVA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1235244QRRRTGKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010314480.11e-147trihelix transcription factor GT-2-like
TrEMBLA0A3Q7JB431e-147A0A3Q7JB43_SOLLC; Uncharacterized protein
STRINGSolyc12g056510.1.11e-147(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.15e-62Trihelix family protein