PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0124s0038.4.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

YABBY

Protein Properties

Length: 180aa MW: 20385.3 Da PI: 10.5971

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0124s0038.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	184.4	5.9e-57	5	147	22	170
YABBY 22 lavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevpr 111 + vsvP +slf +vtvrCGhC++l svn+a a q + + ++l+++ ++l + + +++ + + ++s+ t++ + + ++++ Kalax.0124s0038.4.p 5 IKVSVPCSSLFDIVTVRCGHCSNLWSVNMAAAFQSVLSWQDLHQH---HQLPNYLNGGQDNRIDHLGSSSKITNKMT--MRVPVQKSIE- 88 68************************99998877777665433...34444444444444444444444444444..3334444444. PP YABBY 112 vppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 v+rPPek+qrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl Kalax.0124s0038.4.p 89 ERAVNRPPEKKQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 147 3579***************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.6E-59	5	147	IPR006780	YABBY protein
SuperFamily	SSF47095	4.19E-8	88	140	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.1E-4	94	141	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MVKLIKVSVP CSSLFDIVTV RCGHCSNLWS VNMAAAFQSV LSWQDLHQHH QLPNYLNGGQ 60 DNRIDHLGSS SKITNKMTMR VPVQKSIEER AVNRPPEKKQ RVPSAYNQFI KEEIQRIKAN 120 NPDISHREAF STAAKNWAHF PHIHFGLMLE TNNNNQPTRF DQNNAGKRLM SKAAGLMKK*

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006450896.1	4e-83	axial regulator YABBY 5 isoform X2
Refseq	XP_006475869.1	4e-83	axial regulator YABBY 5 isoform X2
Swissprot	Q8GW46	3e-66	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A1Q3CQH7	8e-82	A0A1Q3CQH7_CEPFO; YABBY domain-containing protein
STRING	VIT_11s0016g05590.t01	9e-81	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	1e-68	YABBY family protein

Link Out ? help Back to Top
Phytozome	Kalax.0124s0038.4.p

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]