PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0124s0059.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family LBD
Protein Properties Length: 224aa    MW: 24267.5 Da    PI: 9.3876
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0124s0059.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26095.36.5e-304105197
               DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                          +C++C+vlrr+C++dC l+p +     p++q +++ +++k++G++ ++++l+a+++++r ++++sl+yeA+ r+ dPvyGavg++++ ++
  Kalax.0124s0059.1.p   4 SCNGCRVLRRGCPDDCSLRPGLswittPEAQGNATVFLAKFYGRAGLMNFLNATSDHHRAEIFKSLLYEACGRIVDPVYGAVGLLWSNNW 93 
                          6***************************************************************************************** PP

               DUF260  86 qleqlkaelall 97 
                            +++++e++l 
  Kalax.0124s0059.1.p  94 SHCEAAVEAVLS 105
                          ******998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.5583109IPR004883Lateral organ boundaries, LOB
PfamPF031952.3E-244102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MKTSCNGCRV LRRGCPDDCS LRPGLSWITT PEAQGNATVF LAKFYGRAGL MNFLNATSDH  60
HRAEIFKSLL YEACGRIVDP VYGAVGLLWS NNWSHCEAAV EAVLSGGRIL PIQNPRDHAG  120
HPIAALNSFD IRHVARLAPH EPDVAPRFTI RTKRRSPRFP KKVVRANWTE LGGPSDGSGF  180
SVETVEGSVA NRVRPNQQQG SDDKSETGLE LSLNLGPGKL KAA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002282602.11e-70PREDICTED: LOB domain-containing protein 40
SwissprotQ9M8866e-55LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A438ED373e-69A0A438ED37_VITVI; LOB domain-containing protein 41
TrEMBLF6HEW83e-69F6HEW8_VITVI; Uncharacterized protein
STRINGVIT_01s0011g03540.t015e-70(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68510.11e-57LOB domain-containing protein 42