PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0127s0057.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 339aa    MW: 35789.6 Da    PI: 6.3206
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0127s0057.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.79.2e-05214236123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++Cg  Fs+   L  H+r+H
  Kalax.0127s0057.1.p 214 HQCSICGSAFSSGQALGGHMRRH 236
                          79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.5E-12136162IPR007087Zinc finger, C2H2
SuperFamilySSF576673.66E-9136159No hitNo description
PROSITE profilePS5015710.18137164IPR007087Zinc finger, C2H2
SMARTSM003550.17137159IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280139160IPR007087Zinc finger, C2H2
SuperFamilySSF576673.66E-9209236No hitNo description
Gene3DG3DSA:3.30.160.604.8E-5212238IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139125.9E-11213238IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.824214241IPR007087Zinc finger, C2H2
SMARTSM003550.011214236IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280216236IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MDFEGMMESA EMESYATVEF AAGPSQQIAK RKRTKRRRIV VSSSSSGGGG DDKQGCVLAS  60
SEEEEEEGDR SVYESTVTTA TEEEDMAYCL ILLARGGGDV GLGDVNREES AIKTERKRKK  120
AVGSRKTAET ISAVGVYECK TCDKAFQSFQ ALGGHRASHH KKPKVAATND AIPEEVKLVD  180
QIKMVSSTAQ SAIQLKPPSS SSSLAAAHNS SKVHQCSICG SAFSSGQALG GHMRRHRGAM  240
INYTNHTAAA AGAAVVESSS SDEAAAVVVE RGTSDNHNDF LSSLDLNLPA PGEEDEDHHR  300
RSYHQQFIAG GHVNSNASAT ASAAALVFST PPLVGCYF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13438KRRRI
2115119RKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.12e-32C2H2 family protein