PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0128s0036.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HD-ZIP
Protein Properties Length: 223aa    MW: 25193.8 Da    PI: 4.9323
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0128s0036.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.51.5e-201972356
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                         kR++f++eq++ Le +F ++++p  +++++LA+ lgL  rqV +WFqNrRa+ k
  Kalax.0128s0036.1.p 19 KRRRFSDEQIKSLEIMFGSESKPEPRTKQQLASDLGLHPRQVAIWFQNRRARLK 72
                         89**************************************************98 PP
2HD-ZIP_I/II116.61.5e-3719110293
          HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                          k+rr+s+eq+k+LE +F +e+k ep+ K++la++Lgl+prqva+WFqnrRAR k+kq+E++y+ Lk+++d+l+++ e L+ke+++L++++
  Kalax.0128s0036.1.p  19 KRRRFSDEQIKSLEIMFGSESKPEPRTKQQLASDLGLHPRQVAIWFQNRRARLKSKQIEREYNILKASFDTLASKYECLKKENQALAAQV 108
                          89**************************************************************************************99 PP

          HD-ZIP_I/II  92 ke 93 
                          ++
  Kalax.0128s0036.1.p 109 QK 110
                          87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.8E-181075IPR009057Homeodomain-like
PROSITE profilePS5007117.6531474IPR001356Homeobox domain
SMARTSM003891.7E-181678IPR001356Homeobox domain
PfamPF000467.4E-181972IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.5E-201981IPR009057Homeodomain-like
CDDcd000865.77E-142375No hitNo description
PRINTSPR000311.2E-54554IPR000047Helix-turn-helix motif
PROSITE patternPS0002704972IPR017970Homeobox, conserved site
PRINTSPR000311.2E-55470IPR000047Helix-turn-helix motif
PfamPF021832.4E-1774115IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MNLEVGGSKQ GGRGGKNGKR RRFSDEQIKS LEIMFGSESK PEPRTKQQLA SDLGLHPRQV  60
AIWFQNRRAR LKSKQIEREY NILKASFDTL ASKYECLKKE NQALAAQVQK LRDQLGKDEG  120
STAGSALPSK QSWRDEEPET DDYLHESKGK PTYILESYDY ETDNKTLVDT SIANPDWLKD  180
EDDIQNLAEP VGSSLTSSEN SWDSSCFLDQ TCSSSLLWEF WS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16674RRARLKSKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021291753.17e-52homeobox-leucine zipper protein ATHB-12-like
TrEMBLA0A1R3K6Y43e-51A0A1R3K6Y4_9ROSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.12e-44homeobox 7