PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0128s0064.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C2H2

Protein Properties

Length: 406aa MW: 43548 Da PI: 8.4241

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0128s0064.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.9	0.00015	61	83	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H H Kalax.0128s0064.1.p 61 FVCKICNKGFQRDQNLQLHRHGH 83 89*****************8766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	3.6E-4	60	80	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.2E-6	60	129	No hit	No description
PROSITE profile	PS50157	10.034	61	83	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	63	83	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence Send to blast
MPDDATAASA EEASVSSSGT QAAQLPLSST VKRKRSLPGM PDADAEVVAL SPKTLMATNR 60 FVCKICNKGF QRDQNLQLHR HGHNLPWKLR QRISNEVRKK VISHGQKKWK CEKCSKKCAV 120 QSDWKAHSKI CGTKERDSFI THRAFCDVLT DDRIRAARTQ NVIFSASGEG RWHITNLIKL 180 NWEASETPEQ VLEDAQPSTA TCRMNSSRNG SASNGIFGSL FAPSCSTSSV QNQTPGFANF 240 IWDVATPDGI TKLAPSLHTE PISLCLSTNN SSSIFRQTGE EPQSSAPKPM GSSLSGSSLL 300 RGLGVVSSLP SSSIQREVLD WNAMPIVSEN TSLQSSLGLR LQYDESSRFN ELMMGNTSLF 360 EPKPTTLDFF GLGMVAGGGS TGGLSALLTS MEGGPDVAAA AASYG*

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence Send to blast

MPDDATAASA EEASVSSSGT QAAQLPLSST VKRKRSLPGM PDADAEVVAL SPKTLMATNR  60
FVCKICNKGF QRDQNLQLHR HGHNLPWKLR QRISNEVRKK VISHGQKKWK CEKCSKKCAV  120
QSDWKAHSKI CGTKERDSFI THRAFCDVLT DDRIRAARTQ NVIFSASGEG RWHITNLIKL  180
NWEASETPEQ VLEDAQPSTA TCRMNSSRNG SASNGIFGSL FAPSCSTSSV QNQTPGFANF  240
IWDVATPDGI TKLAPSLHTE PISLCLSTNN SSSIFRQTGE EPQSSAPKPM GSSLSGSSLL  300
RGLGVVSSLP SSSIQREVLD WNAMPIVSEN TSLQSSLGLR LQYDESSRFN ELMMGNTSLF  360
EPKPTTLDFF GLGMVAGGGS TGGLSALLTS MEGGPDVAAA AASYG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	3e-19	105	161	3	70	Zinc finger protein JACKDAW
5b3h_F	3e-19	105	161	3	70	Zinc finger protein JACKDAW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	87	99	KLRQRISNEVRKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024457504.1	1e-121	protein indeterminate-domain 2 isoform X2
TrEMBL	A0A2K2AFV5	1e-120	A0A2K2AFV5_POPTR; Uncharacterized protein
STRING	POPTR_0005s12710.1	1e-122	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	9e-61	indeterminate(ID)-domain 2

Link Out ? help Back to Top
Phytozome	Kalax.0128s0064.1.p