PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0130s0012.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C3H
Protein Properties Length: 661aa    MW: 73293.3 Da    PI: 5.1474
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0130s0012.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.32e-06108130427
                          ---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                          ++C ff++ G C  Gd+C F Hgp
  Kalax.0130s0012.1.p 108 VPCIFFRK-GLCLKGDKCAFLHGP 130
                          69**9999.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF156632.8E-111670No hitNo description
PROSITE profilePS5010311.161645IPR000571Zinc finger, CCCH-type
SMARTSM003560.00181744IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.9814773IPR000571Zinc finger, CCCH-type
SMARTSM003560.34972IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.258104131IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-5104130IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5105129IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4109130IPR000571Zinc finger, CCCH-type
PfamPF146080.067109129No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 661 aa     Download sequence    Send to blast
MVPDSNQATA PEDEASKRNT DCVYFLASPL TCKKGSECEY RHSEYARVNP RDCWYWLNGS  60
CLNPKCAFRH PPLGDLLGTQ TALSAGTALS LPQAVAPQPV VFQSKQAVPC IFFRKGLCLK  120
GDKCAFLHGP NSVATKPPQK ALPAAEVTGP KSVFSITQGS SEEPKSYEAN ISDLNMYTDS  180
KSVQKISNAQ PKANAVAKRF VVPSSGFNDE NLSYKSTTAA PLSSGGNILI SNHMHQTEKS  240
ADHVMLNDKE VDDFYRESSP GFDVLVDDEL AEDQYYDEDC YGRIEADDGK DLKDYGALPD  300
GDHEMFHDPR DYDGFDGVSD HYSMNQSRIL RERTLRGSAS LGGRNDRKGG SSDRIGQSDL  360
RYRLKQTKGS GLRSVVSNNN AYHNPDERRS GDSRRDSLLV TSLESSLSSR FQGRIKDIQS  420
LPVRGFCSDR DTERGRNLRR KSPGRAQIHG RIGTRVHDDF RNGRNSRGCE GRIKESEDGL  480
GGFSGPKKLA ELKACKSSVK DRLVVGQESF SLGKRKSTGE HEQLESDLSF EGPKSLSEIL  540
KRKKRSEMNA PGSLSSEHEV TNETKSTENT SINKEEHKSS ADVSEKNSEP DHTQPLEARN  600
SDQIDQEDQK YEGDDQGEGG EEYYYEDGEE YNLEGENMEG DFVDEEDRDD FEKKISGMFS  660
*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015895883.11e-163zinc finger CCCH domain-containing protein 17