PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0130s0027.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C3H
Protein Properties Length: 664aa    MW: 73657.3 Da    PI: 4.8206
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0130s0027.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.93.1e-07110132427
                          ---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                          ++C ff++ G C  GdrC F Hgp
  Kalax.0130s0027.1.p 110 VPCIFFQK-GLCLKGDRCAFLHGP 132
                          69******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.2161645IPR000571Zinc finger, CCCH-type
PfamPF156631.4E-111670No hitNo description
SMARTSM003560.00141744IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.9814773IPR000571Zinc finger, CCCH-type
SMARTSM003560.34972IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.605106133IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-5106132IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.05E-5107131IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-4110132IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-5111132IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 664 aa     Download sequence    Send to blast
MVPDTNQPAA PEDEASKRNT DCVYFLASPL TCKKGSECEF RHSEYARVNP RDCWYWLNGS  60
CLNPKCAFRH PPLGGLLGTQ AAVSAGTALA SPQAVAPTPP VAASQSKQAV PCIFFQKGLC  120
LKGDRCAFLH GPNSVATKPP QSAPPSAGVT GSRSIFTITQ GSSEPNNSDL NMYTDVKSVP  180
KVSNAQPKAN AIAERVVFPS RGFNDEKLSY KSTTVAPLPS GSNNLPSNRM YETEKPDDHV  240
TLNDKEADDF YRESSPGFDV LVDDELAEDQ YYDEDHYGAA EAGEGKNMKD LDALPDVDHE  300
MFERSYDGFD RVSAQYSRDK RRISCERTLR GSASLEGRND NKEGRSDRIG QTDLRHRLKQ  360
KSGLRSVISN NNHDERRSAD SRRDSWLTTP PESSLSGRLQ GRIRDIQSPP VRGVFSDRDS  420
ERGRNIRRKS PGRTRIHDRI GTRVHDDFRN ERNSRGYEGR IEGSEDGVDE FSGPKKLSEL  480
KACKSSVKDR LMSGQESFSL GKRKSTGEHE QLDSDLSFEG PKPLSEILKR KKRSEMNAPG  540
TVSSEHKVIN ETKSSENTSI NKEEPKSAAD ASEKRTEPDH TQPFEAPNSD QVDQEEGIIA  600
DEGMEDQNYE GHNQGEGGEE YYYEDGEEYN LEDENIDGEN IEGEYADEED GDDFEKKIGG  660
MFS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008220996.11e-160PREDICTED: zinc finger CCCH domain-containing protein 17
STRINGXP_008220996.11e-160(Prunus mume)