PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0130s0086.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

NF-YB

Protein Properties

Length: 134aa MW: 15469.1 Da PI: 5.932

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0130s0086.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	63.2	5.7e-20	1	65	35	97
NF-YB 35 vqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyvep..lkvylkkyrelegek 97 +qe ++efisfv+seasdkc++++rktingd+++ al +l f++ e+ +y+ k+re+e+ek Kalax.0130s0086.1.p 1 MQEYATEFISFVASEASDKCRKDNRKTINGDNICRALNHLEFDNLGESrqQGTYVIKFREFEREK 65 6999**************************************988611568*******996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00808	6.1E-9	1	37	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	1.0E-19	1	107	IPR009072	Histone-fold
PRINTS	PR00615	5.5E-7	1	19	No hit	No description
SuperFamily	SSF47113	6.91E-15	1	51	IPR009072	Histone-fold
PRINTS	PR00615	5.5E-7	20	38	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 134 aa Download sequence Send to blast
MQEYATEFIS FVASEASDKC RKDNRKTING DNICRALNHL EFDNLGESRQ QGTYVIKFRE 60 FEREKLLSQL HHEEATHLGA FCSYPPNSRD HCKEMADEEA RDSRKSKDDQ PQYLGLHLQQ 120 RSENFTPALG FII*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010674711.1	2e-21	PREDICTED: nuclear transcription factor Y subunit B-4
STRING	XP_010674711.1	8e-21	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09030.1	4e-17	nuclear factor Y, subunit B4

Link Out ? help Back to Top
Phytozome	Kalax.0130s0086.1.p