PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0131s0005.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family Trihelix
Protein Properties Length: 489aa    MW: 52324.9 Da    PI: 7.712
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0131s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix51.33.1e-1699184186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergf.erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          +W++  +  L++++ ++ ++l+rg+l++ +We v++ + e++   +s +qCk+k++nl+kr+k + ++ +++  +++s++ +f+++e
  Kalax.0131s0005.1.p  99 EWSDAAISSLLDVYIDKYTQLNRGNLRGRDWEVVAEMVNEKQKsCKSVEQCKNKIDNLKKRFKVEVQRISSG-GTAVSSWHWFKKME 184
                          5*************************************77665268*******************9999998.566679*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.8E-1897186No hitNo description
Gene3DG3DSA:3.40.1160.101.2E-67241481IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B32.625248482IPR015963Uridylate kinase, bacteria
SuperFamilySSF536336.28E-55248481IPR001048Aspartate/glutamate/uridylate kinase
PfamPF006966.2E-26251461IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042546.86E-112251482No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MASCNDGFSP FADDDVHHHH QQRFSSHHIS ADHDPSPNKV SAAGESDADS GYPGGDESDQ  60
IRDSSGGRGP YYYKKLKPTL LNGAGSESAC VDYRKDREEW SDAAISSLLD VYIDKYTQLN  120
RGNLRGRDWE VVAEMVNEKQ KSCKSVEQCK NKIDNLKKRF KVEVQRISSG GTAVSSWHWF  180
KKMEEIVGNS PSVTKCTPED DRTGIVAASA AAVVGNGIAS SSSFTSRHAK RYSPSPATLN  240
NLKPKPAPKW KRVVFKISGG ALVGSGQNID PKVAMQIANE VATACQLGVE VAIVTGGSNF  300
FCGTSWVSDT GFDRPTAYQI GMMATVMNSI LLQSALEKSG VQARVQTAFA LPEVAEPYSK  360
QRAIRHLEKG RVVIFGGIGA GTGNPLFSTD TAAALRATEI NADAVLKGTN VDGVYDCRSG  420
DAGGILVRSS YREIISGGVA PMDLMAITFC EESGTPVVIF NMLEPGNITK ALCGNRVGTL  480
IDIGRRIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3nwy_A1e-6123448134279Uridylate kinase
3nwy_B1e-6123448134279Uridylate kinase
3nwy_C1e-6123448134279Uridylate kinase
3nwy_D1e-6123448134279Uridylate kinase
3nwy_E1e-6123448134279Uridylate kinase
3nwy_F1e-6123448134279Uridylate kinase
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002268973.10.0PREDICTED: uncharacterized protein LOC100260933
TrEMBLF6I5U80.0F6I5U8_VITVI; Uncharacterized protein
STRINGVIT_13s0074g00240.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.11e-165Trihelix family protein