PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0131s0011.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 540aa    MW: 60613.5 Da    PI: 4.5274
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0131s0011.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.49.9e-5291361128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          l+pGfrFhPtdeelv +yL++k+ g+ +++ ++i+++d+yk+ePw+Lp k k+k+++ ewyfFs  d+ky++g+++nrat++gyWk+tgk
  Kalax.0131s0011.2.p   9 LAPGFRFHPTDEELVRYYLRRKICGRGFRF-DAIASTDVYKSEPWELPgKsKLKSRDLEWYFFSMLDRKYSNGSKTNRATENGYWKTTGK 97 
                          579**************************9.99***************6347777888******************************** PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          d++vl+ k+++vg+kktLv+++grap+g +++Wvmheyrl
  Kalax.0131s0011.2.p  98 DRPVLH-KSKTVGMKKTLVYHHGRAPHGARSNWVMHEYRL 136
                          ******.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-616159IPR003441NAC domain
PROSITE profilePS5100557.2449159IPR003441NAC domain
PfamPF023659.1E-2811136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0009962Biological Processregulation of flavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MGRKPAASLA PGFRFHPTDE ELVRYYLRRK ICGRGFRFDA IASTDVYKSE PWELPGKSKL  60
KSRDLEWYFF SMLDRKYSNG SKTNRATENG YWKTTGKDRP VLHKSKTVGM KKTLVYHHGR  120
APHGARSNWV MHEYRLIDED LEKAGVLQDA FVLCRIFQKS GSGPKNGEQY GAPFEEEEWD  180
DDVVTTVPGE QLTNEVVVCD NPYSEADDVY IDADELEQNN SDISPAAPPA FNYYDDSGSC  240
LFDDDQKPFI GTRENYEANI VDGESCFDVL NVLDPYEGED KPVKEEHFAV SVETPLDASY  300
LLEEPYLNAN QEPLLHEGLF LETDDLLNQV EPDPSNFDML EEYLNYFESS DTLTQTESQV  360
VADESLPAPK VDREIERSVL KSQLHPDVQG SDVASSSNQC PEDTKFDSGF KHQFVNMLGK  420
KQSPYSFSTK DASLRLASSS QSPSSIHVTA GMVQIRNMDA FGNRLSWTFN KNGNIEVVLS  480
LALPRRDADT TSLDILADKL SGKASSAMFR ACFYLIVFWV LIIAISFKIA SLVSTKGSC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-47816519174NAC domain-containing protein 19
3swm_B1e-47816519174NAC domain-containing protein 19
3swm_C1e-47816519174NAC domain-containing protein 19
3swm_D1e-47816519174NAC domain-containing protein 19
3swp_A1e-47816519174NAC domain-containing protein 19
3swp_B1e-47816519174NAC domain-containing protein 19
3swp_C1e-47816519174NAC domain-containing protein 19
3swp_D1e-47816519174NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcripition activator associated with the induction of genes related to flavonoid biosynthesis and required for the accumulation of anthocyanins in response to high light stress (PubMed:19887540). Plays a role in the regulation of 20S and 26S proteasomes in response to high light stress (PubMed:21889048). {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:19887540, ECO:0000269|PubMed:21889048}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00059PBMTransfer from AT5G04410Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By exposure to high light (PubMed:19887540). Induced by heat and methyl methanesulfonate (MMS) treatment (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:19887540}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011031618.11e-178PREDICTED: NAC domain-containing protein 78-like isoform X1
SwissprotQ84K001e-143NAC78_ARATH; NAC domain-containing protein 78
TrEMBLA0A2I4DSM21e-175A0A2I4DSM2_JUGRE; NAC domain-containing protein 53-like
STRINGVIT_13s0019g05240.t011e-170(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.11e-134NAC domain containing protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]
  4. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  5. Gladman NP,Marshall RS,Lee KH,Vierstra RD
    The Proteasome Stress Regulon Is Controlled by a Pair of NAC Transcription Factors in Arabidopsis.
    Plant Cell, 2016. 28(6): p. 1279-96
    [PMID:27194708]
  6. Tang Y,Zhao CY,Tan ST,Xue HW
    Arabidopsis Type II Phosphatidylinositol 4-Kinase PI4Kγ5 Regulates Auxin Biosynthesis and Leaf Margin Development through Interacting with Membrane-Bound Transcription Factor ANAC078.
    PLoS Genet., 2016. 12(8): p. e1006252
    [PMID:27529511]