PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0131s0017.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GATA
Protein Properties Length: 365aa    MW: 39199.1 Da    PI: 7.2973
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0131s0017.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA512e-16267300134
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                          C +C  tkTp+WR gp g+ktLCnaCG+++++ +
  Kalax.0131s0017.1.p 267 CLHCEITKTPQWRAGPMGPKTLCNACGVRHKSGR 300
                          99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.5E-6911341IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.266261297IPR000679Zinc finger, GATA-type
SMARTSM004013.6E-15261311IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.0E-14265298IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577163.09E-14265324No hitNo description
CDDcd002023.46E-13266313No hitNo description
PfamPF003204.1E-14267300IPR000679Zinc finger, GATA-type
PROSITE patternPS003440267292IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MRSWFLEKMS ADPTSLAVED LDCNSFFGHI EDLLDFPEVN NKNSHNAPLV GPGLAWNAPP  60
YSFFNPDSLF IGKGSACTQD LAAELSIPYE DIVQMEWLST FVEDSFSGGD GMTLDKKSFP  120
STKEASAEAA VAPVQFLSSS PISVLESSSS SSCSEGSKVL LVSPDSARVR GGCGRPRSKR  180
PRPHTFKPGS AMQLISPAQS FTDTPQLSAS HGAFQGNSFK QSPHLTTEQN KKRKMKPSSS  240
PATPAAEMSD NETGGADLQS QAGVRKCLHC EITKTPQWRA GPMGPKTLCN ACGVRHKSGR  300
LFPEYRPAAS PTFVPSLHSN SHKKVLEMRT ATVHTPATTP PGGKMGSDTH PELIPNEKAI  360
LEYM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1178182KRPRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017236122.12e-92PREDICTED: GATA transcription factor 8-like
RefseqXP_017236123.12e-92PREDICTED: GATA transcription factor 8-like
TrEMBLA0A166DRT14e-91A0A166DRT1_DAUCS; GATA transcription factor
STRINGGLYMA02G08145.26e-91(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.25e-39GATA family protein