PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0131s0047.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C2H2

Protein Properties

Length: 451aa MW: 48552.9 Da PI: 9.1107

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0131s0047.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.1	3.2e-05	59	81	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H Kalax.0131s0047.1.p 59 FVCEVCSKGFQRDQNLQLHRRGH 81 89*******************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	3.4E-5	58	81	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.52E-7	58	81	No hit	No description
PROSITE profile	PS50157	10.907	59	81	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.043	59	81	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	61	81	IPR007087	Zinc finger, C2H2
SMART	SM00355	69	101	131	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.2E-4	124	157	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.52E-7	131	157	No hit	No description
SMART	SM00355	110	136	156	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence Send to blast
MDNMTSSPPT ASGAGAEVSI SSAARNPPPK KRRNLPGMPD PNAVVISLSP QSLMATNRFV 60 CEVCSKGFQR DQNLQLHRRG HNLPWRLKQR NSEGEMRRKV YVCPEPSCVH HNPSRALGDL 120 TGIKKHYSRK HGEKKWKCDR CSRKYAVKSD CKAHMKTCGT REYKCDCGTL FSRRDSFITH 180 RAFCDALAEE NTKVQTAALI VDDTKPNEDM VVASSPTPPS PVTPVPTTIS PLLSFQSPDL 240 TDNSAVVTDQ SLATLAASSN SSRCTSYISG KISVFASIFA PSTATTPTSF SHFMSPLCQA 300 DHPLPPSSPK GDTGFNHPLT SPSLYLTCNS FSPFPMIPDL PPDHHHYASR SHKPIMSATA 360 LLQKAAQMGA TTSAGSSLLC GFSLAMPSSS SSTHQGHSAD TSSITQWSSH AKADNSVVTA 420 GLRLGLGFPA SDLYVQPTTL DLLGLTKTRH *

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence Send to blast

MDNMTSSPPT ASGAGAEVSI SSAARNPPPK KRRNLPGMPD PNAVVISLSP QSLMATNRFV  60
CEVCSKGFQR DQNLQLHRRG HNLPWRLKQR NSEGEMRRKV YVCPEPSCVH HNPSRALGDL  120
TGIKKHYSRK HGEKKWKCDR CSRKYAVKSD CKAHMKTCGT REYKCDCGTL FSRRDSFITH  180
RAFCDALAEE NTKVQTAALI VDDTKPNEDM VVASSPTPPS PVTPVPTTIS PLLSFQSPDL  240
TDNSAVVTDQ SLATLAASSN SSRCTSYISG KISVFASIFA PSTATTPTSF SHFMSPLCQA  300
DHPLPPSSPK GDTGFNHPLT SPSLYLTCNS FSPFPMIPDL PPDHHHYASR SHKPIMSATA  360
LLQKAAQMGA TTSAGSSLLC GFSLAMPSSS SSTHQGHSAD TSSITQWSSH AKADNSVVTA  420
GLRLGLGFPA SDLYVQPTTL DLLGLTKTRH *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	8e-32	132	194	3	65	Zinc finger protein JACKDAW
5b3h_F	8e-32	132	194	3	65	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010664668.1	1e-144	PREDICTED: protein indeterminate-domain 2 isoform X2
Swissprot	Q9LVQ7	1e-110	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	A0A438K1P9	1e-143	A0A438K1P9_VITVI; Protein indeterminate-domain 1
STRING	VIT_18s0001g12220.t01	1e-141	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	8e-98	indeterminate(ID)-domain 2

Link Out ? help Back to Top
Phytozome	Kalax.0131s0047.1.p

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]