PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0132s0062.2.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bZIP

Protein Properties

Length: 345aa MW: 38515.9 Da PI: 9.1772

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0132s0062.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	24	8.6e-08	223	269	17	63
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 17 ArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 A+rsR RK+++i+eLe+ v++Lea ++ ele l+++ l +e+ Kalax.0132s0062.2.p 223 AQRSRVRKLQYIAELEKNVQTLEADGSEVSAELEFLNQQNLILGMEN 269 89***********************************9998888777 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	9.3E-4	212	271	IPR004827	Basic-leucine zipper domain
CDD	cd14703	7.59E-15	213	262	No hit	No description
SuperFamily	SSF57959	8.44E-6	216	269	No hit	No description
Gene3D	G3DSA:1.20.5.170	6.5E-7	223	265	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MANTKGATNL RSPNYPGKHS LLPPKSPFPS IPHAYTDYNP SPAIGPRAIQ RPKQGPNLHQ 60 RTSSESFALE EQPSWLDELL NEPETPVRKG GHRRSSSDSF AYLDAADAAN REYPANDQRF 120 KNLVPVPSWA SQDLDPLRDA RSFYGEMNSV AKQNNKVWGA SLDPSAQLRE HLVLQNSGMA 180 QDVNLSSLTA SEKQDAKASE KMDHSAKPGA SEADTKRAKQ QFAQRSRVRK LQYIAELEKN 240 VQTLEADGSE VSAELEFLNQ QNLILGMENK ALKQRLDSLA QEQLIKCLEH EVLEREIGRL 300 RALYQPQQLQ PPTRHRRSNS KDLDSQFANL SLKQKDTNSS KVVS*

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MANTKGATNL RSPNYPGKHS LLPPKSPFPS IPHAYTDYNP SPAIGPRAIQ RPKQGPNLHQ  60
RTSSESFALE EQPSWLDELL NEPETPVRKG GHRRSSSDSF AYLDAADAAN REYPANDQRF  120
KNLVPVPSWA SQDLDPLRDA RSFYGEMNSV AKQNNKVWGA SLDPSAQLRE HLVLQNSGMA  180
QDVNLSSLTA SEKQDAKASE KMDHSAKPGA SEADTKRAKQ QFAQRSRVRK LQYIAELEKN  240
VQTLEADGSE VSAELEFLNQ QNLILGMENK ALKQRLDSLA QEQLIKCLEH EVLEREIGRL  300
RALYQPQQLQ PPTRHRRSNS KDLDSQFANL SLKQKDTNSS KVVS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012071280.1	1e-142	uncharacterized protein At4g06598
Refseq	XP_020534676.1	1e-142	uncharacterized protein At4g06598
Swissprot	Q8W3M7	1e-55	Y4598_ARATH; Uncharacterized protein At4g06598
TrEMBL	A0A067KV23	1e-141	A0A067KV23_JATCU; Uncharacterized protein
STRING	cassava4.1_009724m	1e-141	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58110.2	1e-103	bZIP family protein

Link Out ? help Back to Top
Phytozome	Kalax.0132s0062.2.p

Publications ? help Back to Top
Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4. DNA Res., 2001. 8(6): p. 285-90 [PMID:11853315]