PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0132s0086.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family FAR1
Protein Properties Length: 683aa    MW: 78087.4 Da    PI: 7.8714
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0132s0086.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR162.51.2e-1962155190
                 FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHn 86 
                          +fY+e+Ak++GFs+r+++++ +    +  t+r fvC + g++  + +++ k +r+r+++r+gC a l+++k+      +w+vt + ++Hn
  Kalax.0132s0086.1.p  62 EFYSEFAKRCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPVKVSTEAKPQRNRKSSRCGCLAYLRISKTVdlgVPEWRVTGFTNNHN 151
                          6**************9998877356667999**************999999********************99777789*********** PP

                 FAR1  87 Hela 90 
                          Hel 
  Kalax.0132s0086.1.p 152 HELL 155
                          **96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.7E-1662155IPR004330FAR1 DNA binding domain
PfamPF105515.5E-21278369IPR018289MULE transposase domain
PfamPF044344.9E-7553587IPR007527Zinc finger, SWIM-type
PROSITE profilePS509669.47553589IPR007527Zinc finger, SWIM-type
SMARTSM005755.6E-6564591IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 683 aa     Download sequence    Send to blast
MAEEALQIMG VYDDHSDQRS LSLDDASSAE EAPNEIRLSL ETTNDTMPYI GQRFATHDDA  60
YEFYSEFAKR CGFSIRRHRT EGKDGVGKGL TRRYFVCHRA GNTPVKVSTE AKPQRNRKSS  120
RCGCLAYLRI SKTVDLGVPE WRVTGFTNNH NHELLEPNQV RFLPAYRTIS ETDKSRILMF  180
AKTGISVQQM MRLMELEKCV EPGYLPFTEK DVRNLIQSFR KMDGDEENID LLRMCRNIKD  240
RDPNFRFEYT LDPNNKLENI AWSYASSIQS YEIFGDAVVF DTTHRLTAFD MPLGIWVGVN  300
NYGMPCFFGC VLLREENFRS YSWALKVFLS FMKGRAPQTI LTDQNMCLKE AISLEMPATK  360
HALCIWLIVA KFPAWFNAVL GERYNEWKNE FYRLYNMESV EDFEMGWGEM VNSFGLHTSR  420
HVANLFAVRT LWALPYLRTH FFAGLTVAGQ SKAINAFIQR FLSAQTRLAQ FVEQVAVAVD  480
FKDQAGEQQT MQQNLQNICL KTGAPMESHA AAILTPFAFS KLQEQLVLSA HYASFQLDDG  540
FLVRHHTKLD GGRKVYWSPR EGVITCSCHQ FELYGVLCRH ALRVLSAGNC FQIPERYLPV  600
RWRRVSASSA KLQMLPVEHG ERVQLLQSMA SSLITESCKS KERMDMATEQ LAVLLSRVKE  660
QPIMSPSPQC MPCAGSTLQR NF*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028079946.10.0protein FAR1-RELATED SEQUENCE 11
RefseqXP_028079947.10.0protein FAR1-RELATED SEQUENCE 11
SwissprotQ9SY660.0FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLA0A2R6RGG20.0A0A2R6RGG2_ACTCH; Protein FAR1-RELATED SEQUENCE like
STRINGevm.model.supercontig_113.20.0(Carica papaya)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.10.0FAR1-related sequence 11
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]