PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0133s0028.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family M-type_MADS
Protein Properties Length: 212aa    MW: 22465.1 Da    PI: 4.7147
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0133s0028.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.37.1e-171159149
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                         k+i+++ +r vtf+kRr+g++KK   L++L++  +a i+fs+ g+ y++
  Kalax.0133s0028.1.p 11 KPIDDTARRRVTFTKRRQGLFKKMDKLCTLTGCTAAAIVFSTAGRPYTF 59
                         68*********************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006620.212363IPR002100Transcription factor, MADS-box
SMARTSM004327.8E-20362IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.79E-18464IPR002100Transcription factor, MADS-box
CDDcd001201.56E-23460No hitNo description
PRINTSPR004042.5E-13525IPR002100Transcription factor, MADS-box
PfamPF003191.7E-181359IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-132540IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-134061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MGTGRKRIEI KPIDDTARRR VTFTKRRQGL FKKMDKLCTL TGCTAAAIVF STAGRPYTFG  60
DLSLLDAFTG SMISSGGEGG SSESYARQDD HGGCFYLGIG EVSEPDGFKG SGGDGGCSTS  120
YGSEVGGGND HGGVNLGFGE IEGVNGLDGL MEEMSSLLEM RRQVVERLNR HIEGFDDRLL  180
LTSPLSTVEV DVPPPPLMAA DVTHSDDAIF R*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.12e-14M-type_MADS family protein