PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0135s0048.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C3H

Protein Properties

Length: 147aa MW: 16157.3 Da PI: 8.5649

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0135s0048.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	33.5	6.9e-11	58	79	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C++f +tG+C yGd+Ck+ H++ Kalax.0135s0048.1.p 58 CNRFVKTGFCAYGDSCKYLHPK 79 ********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.17E-16	4	61	No hit	No description
Pfam	PF06220	3.5E-10	5	39	IPR013085	Zinc finger, U1-C type
SMART	SM00356	1.3E-5	52	79	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.295	52	80	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.27E-7	53	81	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.2E-8	57	79	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.5E-7	57	79	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 147 aa Download sequence Send to blast
MPLGKYYCDY CDKEFQDTPY ARKRHLQGLQ HQRARSIWYN SFKDPSQLCA EGFRAGVCNR 60 FVKTGFCAYG DSCKYLHPKT DNFPGQVPHV IGAMPAPGAG SQVYGRGYFT GTAVGSSLGI 120 SWDNLPPSLK PPPEGGYPPL PFVDWG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010659728.1	1e-64	PREDICTED: zinc finger CCCH domain-containing protein 3 isoform X1
Swissprot	Q0JP11	2e-43	C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBL	D7UA82	2e-63	D7UA82_VITVI; Uncharacterized protein
STRING	VIT_14s0060g00610.t01	4e-64	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26749.1	1e-27	C3H family protein

Link Out ? help Back to Top
Phytozome	Kalax.0135s0048.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]