PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0135s0054.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 251aa    MW: 26119.2 Da    PI: 6.5138
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0135s0054.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-051941123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         +kC++C+k Fs++  L  H++ H
  Kalax.0135s0054.1.p 19 HKCKYCPKEFSTSQALGGHQNAH 41
                         79******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.38E-61546No hitNo description
Gene3DG3DSA:3.30.160.601.7E-41745IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139128.9E-71842IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.9071946IPR007087Zinc finger, C2H2
PROSITE patternPS0002802141IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MRSRRRREED VAATARRVHK CKYCPKEFST SQALGGHQNA HKPERVADKF KESLGKIGAI  60
RREPNASHRY QPYYANNSDN VAGGYNFAGV GGFSSGHPLY QLPHSSLLAA GLGGGGHAVP  120
VQMGAPAPRF GGQGFAQRVR SWSEFLRRPN AASGESSSSG RTGGSDGRRL SYLPGGIGFG  180
PNANPNDHAN PDPNGNPDGN ADANVNPDNA DGSNADGEAE ADADAVVAAD PGDGDAEADG  240
EGELDLTLRL *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05120.19e-10C2H2 family protein