PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0135s0057.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family M-type_MADS
Protein Properties Length: 199aa    MW: 22229.6 Da    PI: 5.8363
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0135s0057.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF37.53.1e-121049342
                         --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
               SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                         ie+   r+vt+ kRr+++ KK eE+ +L + + +++ifs+
  Kalax.0135s0057.1.p 10 IEDLGGRKVTYKKRRETLVKKMEEITTLSGLQTCLVIFSE 49
                         6677779********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001205.16E-12152No hitNo description
SMARTSM004323.0E-5162IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.741149IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.19E-12552IPR002100Transcription factor, MADS-box
PfamPF003194.4E-111049IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MKGGKQMGLI EDLGGRKVTY KKRRETLVKK MEEITTLSGL QTCLVIFSEF EEGGREVEMV  60
DKFKHASEEN TGRSKVNDAE SLAESRLTKE EGKLSRTQLE NEDKETKQLM SDCLAGKEVA  120
GLSMLDLHRL NWLVDENLKS LRVKMSDLTA AEKVEAVLKS GQEHKSAVPN FDLLLTPIIT  180
SGSILVSIEN WYLSLLRL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65300.11e-16AGAMOUS-like 38